Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYR71_RS04730 Genome accession   NZ_CP103817
Coordinates   1079594..1080973 (+) Length   459 a.a.
NCBI ID   WP_014991736.1    Uniprot ID   A0A9X4JCG7
Organism   Actinobacillus equuli subsp. equuli strain 4005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1074594..1085973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR71_RS04700 (NYR71_04700) yacG 1074880..1075068 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR71_RS04705 (NYR71_04705) coaE 1075050..1075688 (-) 639 WP_279440205.1 dephospho-CoA kinase -
  NYR71_RS04710 (NYR71_04710) - 1075710..1076384 (-) 675 WP_279440206.1 prepilin peptidase -
  NYR71_RS04715 (NYR71_04715) pilC 1076384..1077577 (-) 1194 WP_279440207.1 type II secretion system F family protein Machinery gene
  NYR71_RS04720 (NYR71_04720) pilB 1077570..1078955 (-) 1386 WP_279440208.1 GspE/PulE family protein Machinery gene
  NYR71_RS04725 (NYR71_04725) pilA 1078976..1079413 (-) 438 WP_279439097.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR71_RS04730 (NYR71_04730) radA 1079594..1080973 (+) 1380 WP_014991736.1 DNA repair protein RadA Machinery gene
  NYR71_RS04735 (NYR71_04735) pepB 1081039..1082322 (+) 1284 WP_279440258.1 aminopeptidase PepB -
  NYR71_RS04740 (NYR71_04740) - 1082450..1083385 (+) 936 WP_278225782.1 KpsF/GutQ family sugar-phosphate isomerase -
  NYR71_RS04745 (NYR71_04745) greB 1083395..1083883 (+) 489 WP_005611555.1 transcription elongation factor GreB -
  NYR71_RS04750 (NYR71_04750) ribE 1083975..1084436 (-) 462 WP_005600491.1 6,7-dimethyl-8-ribityllumazine synthase -
  NYR71_RS04755 (NYR71_04755) - 1084511..1085716 (-) 1206 WP_279440209.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49682.38 Da        Isoelectric Point: 7.9500

>NTDB_id=725442 NYR71_RS04730 WP_014991736.1 1079594..1080973(+) (radA) [Actinobacillus equuli subsp. equuli strain 4005]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFGNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=725442 NYR71_RS04730 WP_014991736.1 1079594..1080973(+) (radA) [Actinobacillus equuli subsp. equuli strain 4005]
ATGGCAAAAGCACCGAAAACGGCTTACGTATGTAATGATTGCGGCGCAGAATATTCTCGCTGGATGGGACAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAGCAAAAATGACCGCTTCAGCGGTT
ATGCAGGAGAGACATCAGGCAAGGTACAAACACTTTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGTAGCGGGTTT
AATGAGCTTGATCGTGTACTCGGCGGTGGCGTGGTTCCCGGTTCTGCTATTCTTATCGGGGGACATCCTGGTGCAGGAAA
ATCGACACTATTACTGCAAGTGATGTGCGGCTTATCAAAAATGCTACCGACACTCTATGTCACCGGTGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACTGATAATCTGAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTAATTGACTCTATTCAAGTGATGCATTTATCCGATATTCA
ATCCTCGCCGGGTTCTGTTGCTCAAGTACGAGAATGCGCATCATTTCTTACCCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGTACGCTTGCCGGCCCAAAAGTGTTGGAACACGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCTGATTCACGTTTCAGAACATTACGAAGCCAAAAAAACCGATTCGGCGCGGTAAATGAACTTGG
TGTGTTTGCTATGACTGAACAAGGTTTGCGAGAAGTTAAAAATCCATCCGCTATTTTTTTAAGCCGTAGTGATGAATTGG
TTTCAGGCAGTTCTGTTATGGTTCTTTGGGAAGGGACTCGTCCGTTATTAGTTGAAATTCAAGCGCTTGTTGATCATTCA
ATGCTTGCAAATCCACGTCGTGTGGCTGTCGGTTTAGATCATAATCGCTTATCGCTCTTACTTGCTGTACTCCACCGCCA
TGGTGGGCTACAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTTGGGGGCGTAAAAGTCACAGAGACCAGTGCCGATC
TTGCTTTAATTTTGGCACTGATCTCAAGTTTTAGAAATCGTCCATTACCACAAGACTTAGTGATCTTTGGTGAAGTAGGG
CTTGCCGGCGAAATCCGTCCGGTGCCGAGCGGCCAAGAGCGTATTAGTGAAGCGGCAAAACACGGTTTTAAACGTGCGAT
TGTACCGTTTGGTAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCACTAG
ATGCGCTCGGTAATTTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

99.564

0.488
  radA Streptococcus mitis NCTC 12261

44.835

99.129

0.444
  radA Streptococcus pneumoniae Rx1

44.615

99.129

0.442
  radA Streptococcus pneumoniae D39

44.615

99.129

0.442
  radA Streptococcus pneumoniae R6

44.615

99.129

0.442
  radA Streptococcus pneumoniae TIGR4

44.615

99.129

0.442
  radA Streptococcus mitis SK321

44.615

99.129

0.442