Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYR71_RS04715 Genome accession   NZ_CP103817
Coordinates   1076384..1077577 (-) Length   397 a.a.
NCBI ID   WP_279440207.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 4005     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1071384..1082577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR71_RS04690 (NYR71_04690) lptE 1073176..1073670 (+) 495 WP_278225775.1 LPS assembly lipoprotein LptE -
  NYR71_RS04695 (NYR71_04695) holA 1073778..1074803 (+) 1026 WP_279440204.1 DNA polymerase III subunit delta -
  NYR71_RS04700 (NYR71_04700) yacG 1074880..1075068 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR71_RS04705 (NYR71_04705) coaE 1075050..1075688 (-) 639 WP_279440205.1 dephospho-CoA kinase -
  NYR71_RS04710 (NYR71_04710) - 1075710..1076384 (-) 675 WP_279440206.1 prepilin peptidase -
  NYR71_RS04715 (NYR71_04715) pilC 1076384..1077577 (-) 1194 WP_279440207.1 type II secretion system F family protein Machinery gene
  NYR71_RS04720 (NYR71_04720) pilB 1077570..1078955 (-) 1386 WP_279440208.1 GspE/PulE family protein Machinery gene
  NYR71_RS04725 (NYR71_04725) pilA 1078976..1079413 (-) 438 WP_279439097.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR71_RS04730 (NYR71_04730) radA 1079594..1080973 (+) 1380 WP_014991736.1 DNA repair protein RadA Machinery gene
  NYR71_RS04735 (NYR71_04735) pepB 1081039..1082322 (+) 1284 WP_279440258.1 aminopeptidase PepB -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 44858.40 Da        Isoelectric Point: 9.7263

>NTDB_id=725439 NYR71_RS04715 WP_279440207.1 1076384..1077577(-) (pilC) [Actinobacillus equuli subsp. equuli strain 4005]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIRIQRNFAFARQPKADEITQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVTSGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYLDKAQNLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLLCFAKKFGN
LTACQMRLLSYIPFFNQVIRYIRIIFFTQNLALMLSAHLHLEAALNAFLSEKMHDRLLQQQIRLTLSLLKQGYKFSEGLN
PTVFTSQVVQMIAIGEKSANLAVMCTQISDIYQLKLDYQIDLLSQLLEPVLMLLMGIIIGTVLIGLYLPIFDLGGLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=725439 NYR71_RS04715 WP_279440207.1 1076384..1077577(-) (pilC) [Actinobacillus equuli subsp. equuli strain 4005]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGGTTCCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAGCAAAAGCTCTTGGCAAAAGGCTATCAAGATATTCGTATTCAACGCAATTTTGCTTTTGCTCGAC
AGCCTAAAGCAGATGAAATTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGACATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATTTGGATAAAGCACAAAATTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCGATGGGGATGTTGCTCTGTTTTGCAAAAAAATTCGGAAAT
TTGACCGCTTGTCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATATACGAATTATATTCTT
TACTCAGAATTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGCTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAGCAACAAATACGGCTTACATTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGACTGTATTCACTTCTCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGGTGATGTGTACGCA
GATTAGTGATATTTATCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGGTTTTAATGCTAC
TTATGGGTATCATTATTGGTACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGACTTAGGGGGGCTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

48.363

100

0.484
  pilC Haemophilus influenzae Rd KW20

39

100

0.393
  pilC Haemophilus influenzae 86-028NP

38.75

100

0.39