Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR65_RS09275 Genome accession   NZ_CP103811
Coordinates   1993865..1995001 (-) Length   378 a.a.
NCBI ID   WP_039198282.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain CCUG2041     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1988865..2000001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR65_RS09255 (NYR65_09255) secE 1989232..1989645 (-) 414 WP_039198278.1 preprotein translocase subunit SecE -
  NYR65_RS09260 (NYR65_09260) - 1989951..1990223 (+) 273 WP_039198279.1 PTS sugar transporter subunit IIB -
  NYR65_RS09265 (NYR65_09265) - 1990232..1991593 (+) 1362 WP_039198280.1 PTS ascorbate transporter subunit IIC -
  NYR65_RS09270 (NYR65_09270) - 1991814..1993820 (+) 2007 WP_039198281.1 oligopeptide transporter, OPT family -
  NYR65_RS09275 (NYR65_09275) dprA 1993865..1995001 (-) 1137 WP_039198282.1 DNA-processing protein DprA Machinery gene
  NYR65_RS09280 (NYR65_09280) def 1995186..1995698 (+) 513 WP_039195517.1 peptide deformylase -
  NYR65_RS09285 (NYR65_09285) rfaD 1995838..1996764 (+) 927 WP_015674211.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR65_RS09290 (NYR65_09290) - 1997090..1997584 (+) 495 WP_039198284.1 hemerythrin domain-containing protein -
  NYR65_RS09295 (NYR65_09295) - 1997663..1997992 (-) 330 WP_039198285.1 SMR family transporter -
  NYR65_RS09300 (NYR65_09300) - 1998080..1998370 (-) 291 WP_005602339.1 YfcZ/YiiS family protein -
  NYR65_RS09305 (NYR65_09305) - 1998515..1999147 (-) 633 WP_039198286.1 tellurite resistance TerB family protein -
  NYR65_RS09310 (NYR65_09310) - 1999323..1999613 (-) 291 WP_039198287.1 putative quinol monooxygenase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42121.27 Da        Isoelectric Point: 5.4111

>NTDB_id=725291 NYR65_RS09275 WP_039198282.1 1993865..1995001(-) (dprA) [Actinobacillus equuli subsp. equuli strain CCUG2041]
MSQTDLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESALAWAEQPNQHLLTLFD
EEYPFLLRQISTAPPVLFVRGSISSLSLPQIAIVGSRDFSAYGEYWAGYFTEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLADQIVASGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATVNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGALLTETIEDILQAIQYQLPDQPRQQALFEPPQAAENSQFFARGNHLAKKL
PEMTACQQQIVEHIGLDPISIDDLAKVTSLEVEILLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=725291 NYR65_RS09275 WP_039198282.1 1993865..1995001(-) (dprA) [Actinobacillus equuli subsp. equuli strain CCUG2041]
ATGTCACAGACTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGCGCGCAGCGAATAGCTCGTCTGTTATCCGAAGT
GGATTTCGCCCAATTTTGCCAATATGACAAGCGCCAATTACAACAAATCGGTTGGAACGAAAAACAAATTCAGCGCTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGTGCATTGGCGTGGGCGGAGCAACCGAATCAACATTTATTGACCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCAGCACCGCACCGCCGGTATTATTTGTGCGAGGTTCGATAAGCAGTTTGAG
TCTACCGCAAATTGCGATTGTCGGTAGCCGGGATTTTTCCGCCTACGGAGAATATTGGGCGGGCTATTTTACCGAGCAAC
TGATTAAACATCATTTGGCGGTAACCAGCGGACTCGCGATAGGTATAGACGGTTTTTGTCATCAGCGAGCGGTAGCGGAA
CAGGGAATCACTATTGCCGTTTTGGGTAGCGGTTTAGATCAAGTGTATCCGGCAAGGCATAAAAAATTGGCGGATCAGAT
TGTCGCAAGCGGCGGGGCGTTAGTGTCGGAATTTTTTCCGAATCAACCGCCGCTTGCCGAGAATTTTCCTCGTCGTAATC
GGATTATCAGCGGTTTATCGCTTGGCACATTAGTGGTTGAAGCTACGGTGAATAGTGGTTCACTGATTACCGCCCGTTAT
GCGTTGGAGCAAGGGCGAGAAGTCTTTGCACTCCCGAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGCTTTTAACTGAGACGATAGAGGATATTTTGCAAGCGATTCAATATCAACTGCCGGATCAGCCTCGGC
AACAGGCTCTGTTTGAACCGCCACAAGCGGCTGAAAACTCACAATTTTTTGCAAGGGGCAATCATCTTGCAAAAAAATTG
CCGGAAATGACCGCTTGTCAGCAACAAATTGTGGAACATATCGGTCTTGATCCAATTTCGATTGATGATTTAGCGAAAGT
GACCTCATTGGAAGTGGAAATACTATTAGTCGAGTTACTTGGTTTGGAATTATTAAGTGTAATTAAGCAGGTGAGTGGCG
GTTATGTCAGACAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-273)

DprA winged helix domain (DprA_WH)

(319-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.667

99.206

0.741
  dprA Vibrio campbellii strain DS40M4

47.2

99.206

0.468
  dprA Haemophilus influenzae Rd KW20

50

91.005

0.455
  dprA Vibrio cholerae strain A1552

42.636

100

0.437
  dprA Neisseria gonorrhoeae MS11

38.781

95.503

0.37
  dprA Neisseria meningitidis MC58

38.997

94.974

0.37
  dprA Neisseria meningitidis strain C311

38.997

94.974

0.37
  dprA Legionella pneumophila strain ERS1305867

37.135

99.735

0.37
  dprA Neisseria gonorrhoeae strain FA1090

38.227

95.503

0.365