Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NYR91_RS09060 Genome accession   NZ_CP103784
Coordinates   1737296..1738546 (+) Length   416 a.a.
NCBI ID   WP_014476839.1    Uniprot ID   -
Organism   Bacillus subtilis strain RO-NN-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1732296..1743546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS09030 (NYR91_09030) yfmH 1732386..1733672 (+) 1287 WP_003244823.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  NYR91_RS09035 (NYR91_09035) ymfI 1733727..1734455 (+) 729 WP_014476836.1 elongation factor P 5-aminopentanone reductase -
  NYR91_RS09040 (NYR91_09040) ymfJ 1734536..1734793 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  NYR91_RS09045 (NYR91_09045) - 1734923..1735714 (+) 792 WP_003220998.1 YmfK family protein -
  NYR91_RS09050 (NYR91_09050) rodZ 1735781..1736647 (+) 867 WP_014476837.1 cell shape determination protein RodZ -
  NYR91_RS09055 (NYR91_09055) pgsA 1736697..1737278 (+) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NYR91_RS09060 (NYR91_09060) cinA 1737296..1738546 (+) 1251 WP_014476839.1 competence/damage-inducible protein A Machinery gene
  NYR91_RS09065 (NYR91_09065) recA 1738719..1739765 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  NYR91_RS09070 (NYR91_09070) pbpX 1739933..1741108 (+) 1176 WP_014476840.1 serine hydrolase -
  NYR91_RS09075 (NYR91_09075) rny 1741384..1742946 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45537.85 Da        Isoelectric Point: 5.3714

>NTDB_id=725012 NYR91_RS09060 WP_014476839.1 1737296..1738546(+) (cinA) [Bacillus subtilis strain RO-NN-1]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASKIFAGGVVCYTNDVKQNVLG
IKKDTLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=725012 NYR91_RS09060 WP_014476839.1 1737296..1738546(+) (cinA) [Bacillus subtilis strain RO-NN-1]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGCGCTATTATATGCTTCTTCCTGGGCCACCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCGCAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCGTGTAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAAAAATATTTGCCGGGGGCGTCGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
ATCAAGAAGGACACATTAGATCGTTTTGGAGCGGTCAGCAAGGAGTGCGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCTGGCTCCAGAACGGGAATCAGAAAACGC
GGAGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.279

100

0.993
  cinA Streptococcus mitis NCTC 12261

46.172

100

0.464
  cinA Streptococcus mitis SK321

46.172

100

0.464
  cinA Streptococcus pneumoniae TIGR4

45.933

100

0.462
  cinA Streptococcus pneumoniae Rx1

45.694

100

0.459
  cinA Streptococcus pneumoniae R6

45.694

100

0.459
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus pneumoniae D39

45.455

100

0.457
  cinA Streptococcus suis isolate S10

41.645

90.625

0.377