Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NVV71_RS09050 Genome accession   NZ_CP103399
Coordinates   1729766..1731013 (-) Length   415 a.a.
NCBI ID   WP_070753127.1    Uniprot ID   -
Organism   Listeria innocua strain F6215     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1724766..1736013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV71_RS09025 (NVV71_09025) - 1724788..1725150 (-) 363 WP_003762190.1 RicAFT regulatory complex protein RicA family protein -
  NVV71_RS09030 (NVV71_09030) - 1725167..1725970 (-) 804 WP_003762187.1 TIGR00282 family metallophosphoesterase -
  NVV71_RS09035 (NVV71_09035) - 1725975..1726472 (-) 498 WP_003771777.1 GNAT family N-acetyltransferase -
  NVV71_RS09040 (NVV71_09040) rny 1726588..1728150 (-) 1563 WP_003721904.1 ribonuclease Y -
  NVV71_RS09045 (NVV71_09045) recA 1728451..1729497 (-) 1047 WP_003766841.1 recombinase RecA Machinery gene
  NVV71_RS09050 (NVV71_09050) cinA 1729766..1731013 (-) 1248 WP_070753127.1 competence/damage-inducible protein A Machinery gene
  NVV71_RS09055 (NVV71_09055) pgsA 1731080..1731658 (-) 579 WP_003762173.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NVV71_RS09060 (NVV71_09060) - 1731748..1732683 (-) 936 WP_070753129.1 RodZ family helix-turn-helix domain-containing protein -
  NVV71_RS09065 (NVV71_09065) ymfI 1732732..1733463 (-) 732 WP_070753130.1 elongation factor P 5-aminopentanone reductase -
  NVV71_RS09070 (NVV71_09070) yfmH 1733563..1734849 (-) 1287 WP_070753132.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45645.84 Da        Isoelectric Point: 4.8006

>NTDB_id=722495 NVV71_RS09050 WP_070753127.1 1729766..1731013(-) (cinA) [Listeria innocua strain F6215]
MASAEIIAVGTELLLGQIVNSNAAFISEELAANGIYVYHHTVVGDNPKRLKDVIDIAEKRSDILIFTGGLGPTEDDITKQ
ILAEHLQKNLVEDAFHMNKITEYFASRNRTMTENNKLQAVIIEGSTVLNNDYGFAAGMFLKENNHTYILLPGPPSEMKPM
FSSYAEPLLVSENTEKNVLESKIMRFFGIGESQLAADLNDMILAQVNPTIATYAGDNEVVVRITATAKTKEEASALVNET
EQEILRRDGTFLYGYGEVSLPELVTAMLLEKNITISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILEVSP
QTIKENGVVSSECAKEMAKNVSRLCNTDIGISFTGVAGPDSLEGHPAGTIWIGLHVAGFETEAYQFVYGRDRNHNRRRAV
KQGFQLIKQFLDTNK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=722495 NVV71_RS09050 WP_070753127.1 1729766..1731013(-) (cinA) [Listeria innocua strain F6215]
ATGGCAAGCGCGGAAATTATCGCAGTTGGAACAGAACTTTTACTAGGACAAATCGTGAACTCTAATGCTGCTTTTATTTC
AGAAGAATTAGCAGCTAACGGGATTTATGTCTACCATCACACTGTCGTTGGTGACAACCCTAAACGTTTAAAAGATGTGA
TAGACATTGCTGAAAAACGCAGTGATATTCTCATTTTCACGGGTGGATTAGGTCCTACAGAAGATGATATTACGAAACAA
ATTTTAGCAGAACACCTACAGAAAAACTTAGTAGAAGATGCGTTTCATATGAACAAAATCACGGAGTATTTTGCTTCAAG
AAATAGAACAATGACGGAAAATAACAAATTGCAAGCTGTAATTATTGAAGGATCCACTGTACTAAATAATGATTATGGCT
TTGCTGCAGGAATGTTCTTAAAAGAAAATAATCATACGTACATCTTACTTCCAGGCCCACCTTCAGAAATGAAACCGATG
TTTTCGAGTTATGCTGAACCTTTACTCGTAAGTGAAAATACTGAGAAAAATGTGTTAGAGTCTAAAATAATGCGCTTTTT
CGGTATTGGAGAATCGCAATTAGCAGCAGATTTAAACGATATGATTTTAGCGCAAGTAAATCCTACTATTGCTACGTATG
CAGGTGATAATGAAGTAGTTGTGCGGATTACTGCTACTGCAAAGACTAAAGAGGAAGCAAGTGCCCTTGTGAACGAAACG
GAACAAGAAATTTTACGCAGAGATGGAACTTTTTTATACGGTTATGGCGAAGTTTCTTTACCAGAATTAGTAACAGCCAT
GCTGCTTGAAAAAAATATCACTATTTCCGCTGCTGAAAGTTTTACCGCTGGATTATTCCAAGCAGAAATTGCCCGTTTTC
CTGGTATTTCTAAAATTTTTAAAGGTGGTATGGTCACATACAGCGAAGAGACAAAACAATCTATTCTTGAAGTCTCACCC
CAAACAATAAAAGAAAATGGAGTCGTAAGTTCAGAATGTGCGAAAGAAATGGCGAAGAATGTCAGTAGACTTTGTAACAC
TGATATAGGTATTAGTTTTACCGGCGTTGCAGGACCAGACAGTCTAGAAGGACATCCGGCAGGTACTATTTGGATAGGCT
TGCATGTAGCTGGTTTTGAAACAGAAGCTTATCAGTTCGTTTATGGTAGAGATCGAAATCACAATCGCCGTCGTGCTGTA
AAACAAGGCTTTCAGTTAATTAAGCAATTTTTAGATACAAATAAGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.345

98.554

0.506
  cinA Streptococcus mutans UA159

48.558

100

0.487
  cinA Streptococcus mitis SK321

48.325

100

0.487
  cinA Streptococcus pneumoniae TIGR4

47.857

100

0.484
  cinA Streptococcus mitis NCTC 12261

47.733

100

0.482
  cinA Streptococcus pneumoniae Rx1

47.619

100

0.482
  cinA Streptococcus pneumoniae R6

47.619

100

0.482
  cinA Streptococcus pneumoniae D39

47.381

100

0.48
  cinA Streptococcus suis isolate S10

40.049

99.277

0.398