Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   PVK49_RS04380 Genome accession   NZ_CP118306
Coordinates   867756..868826 (+) Length   356 a.a.
NCBI ID   WP_027968836.1    Uniprot ID   Q5XC26
Organism   Streptococcus pyogenes strain 20154608     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 862756..873826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVK49_RS04360 (PVK49_04350) - 863748..864446 (+) 699 WP_002989743.1 GntR family transcriptional regulator -
  PVK49_RS04365 (PVK49_04355) - 864544..864876 (+) 333 WP_002989745.1 putative DNA-binding protein -
  PVK49_RS04370 (PVK49_04360) ffh 864891..866453 (+) 1563 WP_002993302.1 signal recognition particle protein -
  PVK49_RS04375 (PVK49_04365) - 866588..867286 (-) 699 WP_014635476.1 helix-turn-helix transcriptional regulator -
  PVK49_RS04380 (PVK49_04370) xerS 867756..868826 (+) 1071 WP_027968836.1 tyrosine recombinase XerS Machinery gene
  PVK49_RS04385 (PVK49_04375) - 869526..870008 (+) 483 WP_047235803.1 PASTA domain-containing protein -
  PVK49_RS04390 (PVK49_04380) citC 870097..871149 (+) 1053 WP_047235804.1 [citrate (pro-3S)-lyase] ligase -
  PVK49_RS04395 (PVK49_04385) - 871259..872653 (-) 1395 WP_047235805.1 oxaloacetate decarboxylase subunit alpha -
  PVK49_RS04400 (PVK49_04390) citX 872668..873246 (-) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41487.57 Da        Isoelectric Point: 9.5552

>NTDB_id=721649 PVK49_RS04380 WP_027968836.1 867756..868826(+) (xerS) [Streptococcus pyogenes strain 20154608]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIISLLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=721649 PVK49_RS04380 WP_027968836.1 867756..868826(+) (xerS) [Streptococcus pyogenes strain 20154608]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGTCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTATAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGAGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTTCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5XC26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803