Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   EL334_RS04765 Genome accession   NZ_AP019192
Coordinates   890689..891339 (+) Length   216 a.a.
NCBI ID   WP_001864147.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ASP0581     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 885689..896339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL334_RS04720 (ASP0581_08900) - 886173..886388 (+) 216 WP_001232082.1 YozE family protein -
  EL334_RS04725 (ASP0581_08910) - 886474..887442 (+) 969 WP_000658183.1 PhoH family protein -
  EL334_RS04735 (ASP0581_08920) - 887635..888135 (+) 501 WP_000566988.1 GNAT family N-acetyltransferase -
  EL334_RS04740 - 888138..888463 (+) 326 Protein_893 TfoX/Sxy family protein -
  EL334_RS12220 ald 888764..889875 (-) 1112 Protein_894 alanine dehydrogenase -
  EL334_RS04760 (ASP0581_08970) - 890052..890621 (+) 570 WP_001864145.1 GNAT family N-acetyltransferase -
  EL334_RS04765 (ASP0581_08980) comEA/celA/cilE 890689..891339 (+) 651 WP_001864147.1 helix-hairpin-helix domain-containing protein Machinery gene
  EL334_RS04770 (ASP0581_08990) comEC/celB 891323..893563 (+) 2241 WP_033705318.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EL334_RS04775 (ASP0581_09000) - 893705..893929 (+) 225 WP_015898758.1 hypothetical protein -
  EL334_RS04780 (ASP0581_09010) - 893961..894548 (+) 588 WP_000933540.1 ATP-binding cassette domain-containing protein -
  EL334_RS04785 (ASP0581_09020) - 894552..895730 (+) 1179 WP_033705319.1 membrane protein -

Sequence


Protein


Download         Length: 216 a.a.        Molecular weight: 23205.54 Da        Isoelectric Point: 5.5171

>NTDB_id=72131 EL334_RS04765 WP_001864147.1 890689..891339(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain ASP0581]
MEAIIEKIKEYKIIVICTGLGLLVGGFFLLKPAPQTPVKETNLQVEVAAVSKDLVSEKEVNKEEKEEPVEQDLITVDVKG
AVKSPGIYDLPVGSRVNDAVQKAGGLTEQADSKSLNLAQKVSDEALVYVPTKGEEAVSQQTGSGTASSTSKEKKVNLNKA
SLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKKVSGIGGKTIEKLKDYVTVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=72131 EL334_RS04765 WP_001864147.1 890689..891339(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain ASP0581]
ATGGAAGCAATTATCGAGAAAATCAAAGAGTATAAAATCATCGTCATCTGTACTGGTCTGGGCTTGCTTGTAGGCGGATT
TTTCCTGCTAAAGCCAGCTCCACAAACACCTGTCAAAGAAACGAATTTGCAGGTTGAAGTTGCAGCTGTTTCCAAGGATT
TGGTATCCGAAAAGGAAGTGAACAAGGAAGAGAAGGAAGAACCAGTTGAACAAGATCTAATCACAGTAGATGTCAAAGGT
GCTGTCAAATCGCCAGGGATTTATGACTTGCCTGTAGGTAGTCGAGTCAATGATGCTGTTCAGAAGGCTGGTGGCTTGAC
AGAGCAAGCAGACAGCAAGTCGCTCAATCTAGCTCAGAAAGTTAGTGATGAGGCTCTGGTTTACGTTCCTACTAAGGGAG
AAGAAGCAGTTAGTCAACAGACTGGTTCGGGGACAGCTTCTTCAACAAGCAAGGAAAAGAAGGTCAATCTCAACAAGGCC
AGTCTGGAAGAACTCAAGCAGGTCAAGGGACTGGGAGGAAAACGAGCTCAGGACATTATCGACCATCGTGAGGCAAATGG
CAAGTTCAAGTCAGTAGACGAGCTCAAGAAGGTCTCTGGCATTGGTGGCAAAACAATAGAAAAGCTTAAAGACTATGTTA
CAGTGGATTAA

Domains


Predicted by InterproScan.

(151-214)

(76-126)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae Rx1

98.148

100

0.981

  comEA/celA/cilE Streptococcus pneumoniae D39

98.148

100

0.981

  comEA/celA/cilE Streptococcus pneumoniae R6

98.148

100

0.981

  comEA/celA/cilE Streptococcus pneumoniae TIGR4

97.222

100

0.972

  comEA/celA/cilE Streptococcus mitis NCTC 12261

95.833

100

0.958

  comEA/celA/cilE Streptococcus mitis SK321

91.204

100

0.912

  comEA Lactococcus lactis subsp. cremoris KW2

43.612

100

0.458

  comEA Latilactobacillus sakei subsp. sakei 23K

33.906

100

0.366

  comEA Bacillus subtilis subsp. subtilis str. 168

41.579

87.963

0.366


Multiple sequence alignment