Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NW343_RS17815 Genome accession   NZ_CP102942
Coordinates   3830049..3831308 (+) Length   419 a.a.
NCBI ID   WP_012481099.1    Uniprot ID   B2FRS9
Organism   Stenotrophomonas maltophilia strain SCAID WND1-2022 (370)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3825049..3836308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW343_RS17795 (NW343_17795) pilR 3825258..3826631 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  NW343_RS17800 (NW343_17800) pilB 3826757..3828490 (-) 1734 WP_012481096.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NW343_RS17805 (NW343_17805) - 3828713..3829120 (-) 408 WP_012481097.1 pilin -
  NW343_RS17810 (NW343_17810) - 3829273..3829695 (-) 423 WP_012481098.1 pilin -
  NW343_RS17815 (NW343_17815) pilC 3830049..3831308 (+) 1260 WP_012481099.1 type II secretion system F family protein Machinery gene
  NW343_RS17820 (NW343_17820) - 3831316..3832179 (+) 864 WP_012481100.1 A24 family peptidase -
  NW343_RS17825 (NW343_17825) coaE 3832191..3832802 (+) 612 WP_012481101.1 dephospho-CoA kinase -
  NW343_RS17830 (NW343_17830) - 3833204..3834118 (+) 915 WP_005407612.1 IS110-like element ISStma6 family transposase -
  NW343_RS17835 (NW343_17835) - 3834130..3834447 (-) 318 WP_229302602.1 hypothetical protein -
  NW343_RS17840 (NW343_17840) - 3834930..3836297 (-) 1368 WP_012481104.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45846.28 Da        Isoelectric Point: 10.1071

>NTDB_id=720020 NW343_RS17815 WP_012481099.1 3830049..3831308(+) (pilC) [Stenotrophomonas maltophilia strain SCAID WND1-2022 (370)]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
MLLIAIGAAVGAIMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=720020 NW343_RS17815 WP_012481099.1 3830049..3831308(+) (pilC) [Stenotrophomonas maltophilia strain SCAID WND1-2022 (370)]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGTGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGTGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGTCGAAGCCGCTGTTCGGCGCCGCCGGCAGCCCGGTCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAACTGGTGGACACCATCCGCACCGACATCGAGGGCGGCTCCTCGATGTACGAGG
CGGTCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGTGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAGGCACTGTTCTACCC
GATCATGGTGGTGGTGGTGGCGATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTTGGTGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAACCTGTCACGGTTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTCATCGCGATCGGTGCCGCGGTCGGCGCGATCATGGCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGTGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGTGCTACCGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTTTCGGTCGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCTGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2FRS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.303

94.511

0.523
  pilC Acinetobacter baylyi ADP1

51.597

97.136

0.501
  pilC Legionella pneumophila strain ERS1305867

52.13

95.227

0.496
  pilC Acinetobacter baumannii D1279779

49.877

97.136

0.484
  pilG Neisseria gonorrhoeae MS11

45.137

95.704

0.432
  pilG Neisseria meningitidis 44/76-A

44.888

95.704

0.43
  pilC Vibrio cholerae strain A1552

42.118

96.897

0.408
  pilC Vibrio campbellii strain DS40M4

41.646

95.704

0.399
  pilC Thermus thermophilus HB27

38.06

95.943

0.365