Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NHB23_RS09290 Genome accession   NZ_CP102716
Coordinates   2035982..2037223 (-) Length   413 a.a.
NCBI ID   WP_005688669.1    Uniprot ID   A0A508YV25
Organism   Lacticaseibacillus rhamnosus strain DM065     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2030982..2042223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHB23_RS09275 (NHB23_009275) - 2031940..2032593 (+) 654 WP_049180032.1 YigZ family protein -
  NHB23_RS09280 (NHB23_009280) rny 2032682..2034253 (-) 1572 WP_005684479.1 ribonuclease Y -
  NHB23_RS09285 (NHB23_009285) recA 2034878..2035930 (-) 1053 WP_005688671.1 recombinase RecA Machinery gene
  NHB23_RS09290 (NHB23_009290) cinA 2035982..2037223 (-) 1242 WP_005688669.1 competence/damage-inducible protein A Machinery gene
  NHB23_RS09295 (NHB23_009295) pgsA 2037452..2038045 (-) 594 WP_005688184.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NHB23_RS09300 (NHB23_009300) - 2038042..2038977 (-) 936 WP_005688668.1 helix-turn-helix domain-containing protein -
  NHB23_RS09305 (NHB23_009305) ymfI 2039064..2039792 (-) 729 WP_005688666.1 elongation factor P 5-aminopentanone reductase -
  NHB23_RS09310 (NHB23_009310) yfmH 2039792..2041084 (-) 1293 WP_005688664.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44384.10 Da        Isoelectric Point: 8.3237

>NTDB_id=718542 NHB23_RS09290 WP_005688669.1 2035982..2037223(-) (cinA) [Lacticaseibacillus rhamnosus strain DM065]
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDAGAMAKLAARVKQQQRPMTPNNRLQAMYPKGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGVGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLAEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=718542 NHB23_RS09290 WP_005688669.1 2035982..2037223(-) (cinA) [Lacticaseibacillus rhamnosus strain DM065]
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATCACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGTATTGCAAGCTATCATCAACAGGTTGTTGGGGATAACGCAAAACGACTGGCTGACGCGATAA
GTTTGGCTGAACAACGCAGTGATATCGTTATTTTGATTGGCGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTGGCGCTATGGCCAAGTTGGCTGCGCGGGTTAAACAACAGCA
ACGTCCAATGACACCCAATAATCGCTTGCAAGCGATGTATCCCAAAGGCGCAATCGTATTGGCCAATCGTGTTGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCAATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAAGAAGTTTTGGAAAGTCGCGTGATGCGTTTCTTTGG
TGTCGGCGAATCGCAACTTGTGACAGATTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACTTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCAAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGCCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCTCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGCCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CGGGAGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATCGATGCC
CGTCAGCTAGCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCCGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGAGAGAAACCAATAGCACAAGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A508YV25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.781

100

0.528
  cinA Streptococcus mitis NCTC 12261

51.781

100

0.528
  cinA Streptococcus pneumoniae TIGR4

51.306

100

0.523
  cinA Streptococcus pneumoniae Rx1

50.831

100

0.518
  cinA Streptococcus pneumoniae R6

50.831

100

0.518
  cinA Streptococcus pneumoniae D39

50.594

100

0.516
  cinA Streptococcus mutans UA159

51.202

100

0.516
  cinA Bacillus subtilis subsp. subtilis str. 168

44.417

99.758

0.443
  cinA Streptococcus suis isolate S10

41.534

91.525

0.38