Detailed information
Bioinformatically predicted
Overview
| Name | cinA | Type | Machinery gene |
| Locus tag | NIM79_RS04655 | Genome accession | NZ_CP102712 |
| Coordinates | 980639..981880 (+) | Length | 413 a.a. |
| NCBI ID | WP_014569352.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus rhamnosus strain DM054 | ||
| Function | facilitate localization of RecA (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 972723..1021610 | 980639..981880 | within | 0 |
Gene organization within MGE regions
Location: 972723..1021610
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIM79_RS04625 (NIM79_004625) | - | 973221..975521 (+) | 2301 | WP_014569347.1 | DNA translocase FtsK | - |
| NIM79_RS04630 (NIM79_004630) | yfmF | 975530..976792 (+) | 1263 | WP_014569348.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| NIM79_RS04635 (NIM79_004635) | yfmH | 976789..978081 (+) | 1293 | WP_014569349.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| NIM79_RS04640 (NIM79_004640) | ymfI | 978081..978809 (+) | 729 | WP_014569350.1 | elongation factor P 5-aminopentanone reductase | - |
| NIM79_RS04645 (NIM79_004645) | - | 978896..979831 (+) | 936 | WP_005688668.1 | helix-turn-helix domain-containing protein | - |
| NIM79_RS04650 (NIM79_004650) | pgsA | 979828..980418 (+) | 591 | WP_014569351.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| NIM79_RS04655 (NIM79_004655) | cinA | 980639..981880 (+) | 1242 | WP_014569352.1 | competence/damage-inducible protein A | Machinery gene |
| NIM79_RS04660 (NIM79_004660) | recA | 981932..982984 (+) | 1053 | WP_005688187.1 | recombinase RecA | Machinery gene |
| NIM79_RS04665 (NIM79_004665) | rny | 983609..985180 (+) | 1572 | WP_005684479.1 | ribonuclease Y | - |
| NIM79_RS04670 (NIM79_004670) | - | 985269..985925 (-) | 657 | WP_029943817.1 | YigZ family protein | - |
| NIM79_RS04675 (NIM79_004675) | - | 985953..987218 (+) | 1266 | WP_014569356.1 | DEAD/DEAH box helicase | - |
| NIM79_RS04680 (NIM79_004680) | - | 987377..987895 (+) | 519 | WP_005688681.1 | ComF family protein | - |
| NIM79_RS04685 (NIM79_004685) | hpf | 988087..988644 (+) | 558 | WP_005684485.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| NIM79_RS04690 (NIM79_004690) | secA | 989227..991590 (+) | 2364 | WP_005684487.1 | preprotein translocase subunit SecA | - |
| NIM79_RS04695 (NIM79_004695) | prfB | 991732..992848 (+) | 1117 | WP_154241369.1 | peptide chain release factor 2 | - |
| NIM79_RS04700 (NIM79_004700) | ftsE | 992925..993611 (+) | 687 | WP_005684489.1 | cell division ATP-binding protein FtsE | - |
| NIM79_RS04705 (NIM79_004705) | ftsX | 993601..994488 (+) | 888 | WP_005684490.1 | permease-like cell division protein FtsX | - |
| NIM79_RS04710 (NIM79_004710) | - | 994566..994703 (+) | 138 | WP_014569359.1 | hypothetical protein | - |
| NIM79_RS04715 (NIM79_004715) | - | 994759..995856 (+) | 1098 | WP_014569360.1 | PDZ domain-containing protein | - |
| NIM79_RS04720 (NIM79_004720) | - | 995853..996557 (+) | 705 | WP_005688690.1 | response regulator transcription factor | - |
| NIM79_RS04725 (NIM79_004725) | pnpS | 996550..998217 (+) | 1668 | WP_014569361.1 | two-component system histidine kinase PnpS | - |
| NIM79_RS04730 (NIM79_004730) | - | 998307..999173 (+) | 867 | WP_005684496.1 | phosphate ABC transporter substrate-binding protein PstS family protein | - |
| NIM79_RS04735 (NIM79_004735) | pstC | 999321..1000244 (+) | 924 | WP_005684497.1 | phosphate ABC transporter permease subunit PstC | - |
| NIM79_RS04740 (NIM79_004740) | pstA | 1000241..1001125 (+) | 885 | WP_005684499.1 | phosphate ABC transporter permease PstA | - |
| NIM79_RS04745 (NIM79_004745) | pstB | 1001196..1002014 (+) | 819 | WP_005713669.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| NIM79_RS04750 (NIM79_004750) | pstB | 1002024..1002788 (+) | 765 | WP_005684501.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| NIM79_RS04755 (NIM79_004755) | phoU | 1002799..1003476 (+) | 678 | WP_005684502.1 | phosphate signaling complex protein PhoU | - |
| NIM79_RS04760 (NIM79_004760) | - | 1003730..1004608 (-) | 879 | WP_048653158.1 | IS3 family transposase | - |
| NIM79_RS04765 (NIM79_004765) | - | 1004605..1005333 (-) | 729 | WP_014569363.1 | helix-turn-helix domain-containing protein | - |
| NIM79_RS04770 (NIM79_004770) | liaX | 1005902..1007392 (+) | 1491 | WP_014569364.1 | daptomycin-sensing surface protein LiaX | - |
| NIM79_RS04775 (NIM79_004775) | - | 1007404..1007664 (+) | 261 | WP_005688700.1 | hypothetical protein | - |
| NIM79_RS04780 (NIM79_004780) | - | 1007667..1008002 (+) | 336 | WP_005684507.1 | phage holin family protein | - |
| NIM79_RS04785 (NIM79_004785) | hprK | 1008269..1009228 (+) | 960 | WP_005684508.1 | HPr(Ser) kinase/phosphatase | - |
| NIM79_RS04790 (NIM79_004790) | lgt | 1009230..1010057 (+) | 828 | WP_014569365.1 | prolipoprotein diacylglyceryl transferase | - |
| NIM79_RS04795 (NIM79_004795) | - | 1010068..1011123 (+) | 1056 | WP_014569366.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| NIM79_RS04800 (NIM79_004800) | trxB | 1011189..1012136 (+) | 948 | WP_005684511.1 | thioredoxin-disulfide reductase | - |
| NIM79_RS04805 (NIM79_004805) | - | 1012388..1014115 (+) | 1728 | WP_014569367.1 | phospho-sugar mutase | - |
| NIM79_RS04810 (NIM79_004810) | - | 1014575..1015222 (+) | 648 | WP_014569368.1 | YfbR-like 5'-deoxynucleotidase | - |
| NIM79_RS04815 (NIM79_004815) | uvrB | 1015493..1017508 (+) | 2016 | WP_005688715.1 | excinuclease ABC subunit UvrB | - |
| NIM79_RS04820 (NIM79_004820) | uvrA | 1017689..1020583 (+) | 2895 | WP_014569369.1 | excinuclease ABC subunit UvrA | - |
| NIM79_RS04825 (NIM79_004825) | - | 1020785..1021324 (+) | 540 | WP_014569370.1 | HdeD family acid-resistance protein | - |
Sequence
Protein
Download Length: 413 a.a. Molecular weight: 44472.12 Da Isoelectric Point: 7.2504
>NTDB_id=718476 NIM79_RS04655 WP_014569352.1 980639..981880(+) (cinA) [Lacticaseibacillus rhamnosus strain DM054]
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNRLQAMYPQGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGIGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLSEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNRLQAMYPQGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGIGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLSEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE
Nucleotide
Download Length: 1242 bp
>NTDB_id=718476 NIM79_RS04655 WP_014569352.1 980639..981880(+) (cinA) [Lacticaseibacillus rhamnosus strain DM054]
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATTACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGTATTGCGAGCTATCATCAACAGGTTGTTGGGGATAATGCAAAACGACTGGCTGACGCGATAA
GTTTGGCGGAACAACGCAGTGATATCGTTATTTTGATTGGTGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTGACGCTATGGCCAAGTTGGCTGCGCGGGTTAAACAACAGCA
ACGTCCAATGACACCCAATAATCGCCTGCAAGCGATGTATCCCCAAGGCGCAATCGTATTGGCCAATCGTGTCGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCGATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAAGAAGTTTTGGAAAGTCGCGTGATGCGTTTCTTTGG
TATCGGCGAATCGCAACTTGTGACAGACTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACTTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCGAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGTCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCCCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGTCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CGGGAGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATTGATGCC
CGTCAGCTATCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCGGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGAGAGAAACCAATAGCACAAGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATTACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGTATTGCGAGCTATCATCAACAGGTTGTTGGGGATAATGCAAAACGACTGGCTGACGCGATAA
GTTTGGCGGAACAACGCAGTGATATCGTTATTTTGATTGGTGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTGACGCTATGGCCAAGTTGGCTGCGCGGGTTAAACAACAGCA
ACGTCCAATGACACCCAATAATCGCCTGCAAGCGATGTATCCCCAAGGCGCAATCGTATTGGCCAATCGTGTCGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCGATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAAGAAGTTTTGGAAAGTCGCGTGATGCGTTTCTTTGG
TATCGGCGAATCGCAACTTGTGACAGACTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACTTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCGAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGTCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCCCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGTCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CGGGAGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATTGATGCC
CGTCAGCTATCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCGGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGAGAGAAACCAATAGCACAAGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| cinA | Streptococcus mitis SK321 |
52.019 |
100 |
0.53 |
| cinA | Streptococcus mitis NCTC 12261 |
52.019 |
100 |
0.53 |
| cinA | Streptococcus pneumoniae TIGR4 |
51.544 |
100 |
0.525 |
| cinA | Streptococcus pneumoniae R6 |
51.069 |
100 |
0.521 |
| cinA | Streptococcus pneumoniae Rx1 |
51.069 |
100 |
0.521 |
| cinA | Streptococcus mutans UA159 |
51.442 |
100 |
0.518 |
| cinA | Streptococcus pneumoniae D39 |
50.831 |
100 |
0.518 |
| cinA | Bacillus subtilis subsp. subtilis str. 168 |
44.66 |
99.758 |
0.446 |
| cinA | Streptococcus suis isolate S10 |
42.593 |
91.525 |
0.39 |