Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NVV61_RS06625 Genome accession   NZ_CP102627
Coordinates   1325443..1326690 (+) Length   415 a.a.
NCBI ID   WP_010991531.1    Uniprot ID   -
Organism   Listeria innocua strain F4078     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1320443..1331690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV61_RS06605 (NVV61_06605) yfmH 1321607..1322893 (+) 1287 WP_010991530.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  NVV61_RS06610 (NVV61_06610) ymfI 1322993..1323724 (+) 732 WP_003771775.1 elongation factor P 5-aminopentanone reductase -
  NVV61_RS06615 (NVV61_06615) - 1323773..1324708 (+) 936 WP_003762172.1 RodZ family helix-turn-helix domain-containing protein -
  NVV61_RS06620 (NVV61_06620) pgsA 1324798..1325376 (+) 579 WP_003762173.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NVV61_RS06625 (NVV61_06625) cinA 1325443..1326690 (+) 1248 WP_010991531.1 competence/damage-inducible protein A Machinery gene
  NVV61_RS06630 (NVV61_06630) recA 1326960..1328006 (+) 1047 WP_003766841.1 recombinase RecA Machinery gene
  NVV61_RS06635 (NVV61_06635) rny 1328307..1329869 (+) 1563 WP_003721904.1 ribonuclease Y -
  NVV61_RS06640 (NVV61_06640) - 1329985..1330482 (+) 498 WP_010991532.1 GNAT family N-acetyltransferase -
  NVV61_RS06645 (NVV61_06645) - 1330487..1331290 (+) 804 WP_003762187.1 TIGR00282 family metallophosphoesterase -
  NVV61_RS06650 (NVV61_06650) - 1331307..1331669 (+) 363 WP_003762190.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45646.78 Da        Isoelectric Point: 4.6981

>NTDB_id=718216 NVV61_RS06625 WP_010991531.1 1325443..1326690(+) (cinA) [Listeria innocua strain F4078]
MASAEIIAVGTELLLGQIVNSNAAFISEELAANGIYVYHHTVVGDNPKRLKDVIDIAEKRSDILIFTGGLGPTEDDITKQ
ILAEHLQKNLVEDAFHMNEITEYFASRNRTMTENNKLQAVIIEGSTVLNNDYGFAAGMFLKENNHTYILLPGPPSEMKPM
FSSYAEPLLVSENTEKNVLESKIMRFFGIGESQLAADLNDMILAQVNPTIATYAGDNEVVVRITATAKTKEEASALVNET
EQEILRRDGTFLYGYGEVSLPELVTAMLLEKNITISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILEVSP
QTIKENGVVSSECAKEMAKNVSRLCNTDIGISFTGVAGPDSLEGHPAGTIWIGLHVAGFETEAYQFVYGRDRNHNRRRAV
KQGFQLIKQFLDTNK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=718216 NVV61_RS06625 WP_010991531.1 1325443..1326690(+) (cinA) [Listeria innocua strain F4078]
ATGGCAAGCGCAGAAATTATTGCAGTTGGAACAGAACTTTTACTAGGACAAATCGTGAACTCTAATGCTGCTTTTATTTC
AGAAGAATTAGCAGCTAACGGGATTTATGTCTACCATCACACTGTCGTTGGTGACAACCCTAAACGTTTAAAAGATGTGA
TAGACATTGCTGAAAAACGTAGTGATATTCTCATTTTTACGGGTGGATTAGGTCCTACAGAAGACGATATTACGAAACAA
ATTTTAGCAGAACATCTACAGAAAAACTTAGTAGAAGATGCGTTTCATATGAACGAAATCACGGAGTATTTTGCTTCAAG
AAATAGAACAATGACGGAAAATAACAAATTGCAAGCTGTAATTATTGAAGGATCCACTGTACTAAATAATGATTATGGCT
TTGCTGCAGGAATGTTCTTAAAAGAAAATAATCATACGTACATCTTACTTCCAGGCCCACCTTCAGAAATGAAACCGATG
TTTTCGAGTTATGCTGAACCTTTACTCGTAAGTGAAAATACTGAGAAAAATGTGTTAGAGTCTAAAATAATGCGCTTTTT
CGGTATTGGAGAATCGCAATTAGCAGCAGATTTAAACGATATGATTTTAGCGCAAGTAAATCCTACTATTGCTACATATG
CAGGTGATAATGAAGTCGTTGTGCGGATTACTGCTACTGCAAAGACTAAAGAGGAAGCGAGTGCCCTTGTGAACGAAACG
GAACAAGAAATTTTACGCAGAGATGGAACTTTTTTATACGGTTATGGCGAAGTTTCTTTACCAGAGTTAGTAACAGCCAT
GCTGCTTGAAAAAAATATCACTATTTCCGCTGCTGAAAGTTTTACCGCTGGATTATTCCAAGCAGAAATTGCCCGTTTTC
CTGGTATTTCTAAAATTTTTAAAGGTGGCATGGTCACATACAGCGAAGAGACAAAACAATCTATTCTTGAAGTCTCACCT
CAAACAATAAAAGAAAATGGCGTCGTAAGTTCAGAATGTGCGAAAGAAATGGCGAAGAATGTCAGCAGACTTTGTAACAC
TGATATAGGCATTAGTTTTACCGGTGTTGCAGGACCAGACAGTCTAGAAGGACATCCCGCAGGTACTATTTGGATAGGCT
TACATGTAGCTGGTTTTGAAACAGAAGCTTATCAGTTCGTTTATGGTAGAGATCGAAATCACAATCGCCGTCGTGCTGTA
AAACAAGGCTTTCAGTTAATTAAGCAATTTTTAGATACAAATAAGTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.345

98.554

0.506
  cinA Streptococcus mutans UA159

48.558

100

0.487
  cinA Streptococcus mitis SK321

48.086

100

0.484
  cinA Streptococcus pneumoniae TIGR4

47.619

100

0.482
  cinA Streptococcus pneumoniae Rx1

47.381

100

0.48
  cinA Streptococcus pneumoniae R6

47.381

100

0.48
  cinA Streptococcus mitis NCTC 12261

47.494

100

0.48
  cinA Streptococcus pneumoniae D39

47.143

100

0.477
  cinA Streptococcus suis isolate S10

39.806

99.277

0.395