Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   IL310_RS05435 Genome accession   NZ_CP117409
Coordinates   633136..633807 (+) Length   223 a.a.
NCBI ID   WP_098384079.1    Uniprot ID   -
Organism   Lactococcus lactis strain LB7     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 628136..638807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL310_RS05410 (IL310_05415) - 628569..628928 (+) 360 WP_201248252.1 YxeA family protein -
  IL310_RS05415 (IL310_05420) - 628959..629102 (+) 144 WP_012898330.1 hypothetical protein -
  IL310_RS05420 (IL310_05425) - 629117..629896 (+) 780 WP_012898329.1 ABC transporter ATP-binding protein -
  IL310_RS05425 (IL310_05430) - 629889..631889 (+) 2001 WP_201248251.1 FtsX-like permease family protein -
  IL310_RS05430 (IL310_05435) - 632069..633133 (+) 1065 WP_201248250.1 VanZ family protein -
  IL310_RS05435 (IL310_05440) braR 633136..633807 (+) 672 WP_098384079.1 response regulator transcription factor Regulator
  IL310_RS05440 (IL310_05445) - 633794..634669 (+) 876 WP_003132784.1 sensor histidine kinase -
  IL310_RS05445 (IL310_05450) - 634672..635736 (+) 1065 WP_010906116.1 prephenate dehydrogenase -
  IL310_RS05450 (IL310_05455) aroA 635857..637149 (+) 1293 WP_058206308.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  IL310_RS05455 (IL310_05460) - 637173..637661 (+) 489 WP_017864896.1 shikimate kinase -
  IL310_RS05460 (IL310_05465) pheA 637663..638502 (+) 840 WP_058203948.1 prephenate dehydratase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25496.41 Da        Isoelectric Point: 4.8093

>NTDB_id=718017 IL310_RS05435 WP_098384079.1 633136..633807(+) (braR) [Lactococcus lactis strain LB7]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEVGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=718017 IL310_RS05435 WP_098384079.1 633136..633807(+) (braR) [Lactococcus lactis strain LB7]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCTCTGGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGACATGAATCAAGTAACCGCTATGAATCAAGGAGCTGATGATTTTGTAACCAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAATTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTAACGAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAGTTGGCTTTGATAAGCATATCATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.991

99.552

0.408