Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NUG20_RS16225 Genome accession   NZ_CP102592
Coordinates   3885010..3886269 (+) Length   419 a.a.
NCBI ID   WP_263398512.1    Uniprot ID   -
Organism   Xanthomonas sp. CFBP 8443     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3880010..3891269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUG20_RS16200 (NUG20_16205) - 3880693..3881808 (+) 1116 WP_263395457.1 glycosyltransferase family 4 protein -
  NUG20_RS16205 (NUG20_16210) - 3881841..3883640 (-) 1800 WP_263395458.1 hypothetical protein -
  NUG20_RS16210 (NUG20_16215) - 3883741..3884151 (-) 411 WP_286038011.1 pilin -
  NUG20_RS16220 (NUG20_16225) pilA/pilAI 3884219..3884626 (-) 408 WP_263395459.1 pilin Machinery gene
  NUG20_RS16225 (NUG20_16230) pilC 3885010..3886269 (+) 1260 WP_263398512.1 type II secretion system F family protein Machinery gene
  NUG20_RS16230 (NUG20_16235) - 3886276..3887139 (+) 864 WP_263395460.1 A24 family peptidase -
  NUG20_RS16235 (NUG20_16240) coaE 3887153..3887773 (+) 621 WP_263395461.1 dephospho-CoA kinase -
  NUG20_RS16240 (NUG20_16245) - 3887891..3889225 (-) 1335 WP_263395462.1 HAMP domain-containing sensor histidine kinase -
  NUG20_RS16245 (NUG20_16250) - 3889218..3889895 (-) 678 WP_145703507.1 response regulator transcription factor -
  NUG20_RS16250 (NUG20_16255) - 3889910..3890368 (-) 459 WP_263395463.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45753.03 Da        Isoelectric Point: 10.1183

>NTDB_id=717980 NUG20_RS16225 WP_263398512.1 3885010..3886269(+) (pilC) [Xanthomonas sp. CFBP 8443]
MSATRSAVPKEPVARNTSQQLPFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGSAGSKISAKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVDQVRTDIEGGSSLYEAISKHPIQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWM
LLIVLVGTIVGFIFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=717980 NUG20_RS16225 WP_263398512.1 3885010..3886269(+) (pilC) [Xanthomonas sp. CFBP 8443]
ATGTCCGCAACTCGTAGCGCAGTACCCAAAGAGCCCGTCGCGCGCAATACCAGCCAGCAGCTGCCGTTCGTCTGGGAAGG
GACGGATAAGCGCGGCGTCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGCGCCGAACTGCGCCGCC
AGGGCATCACGCCGTCGGTGGTCAAACCCAAGCCCAAGCCGCTGTTCGGCTCTGCCGGCAGCAAGATCAGCGCGAAGGAC
ATCGCCTTTTTCAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTCCCCATCGTGGGGTCGCTGGAGATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGATCAGGTCCGCACCGACATCGAGGGCGGTTCGTCGCTCTACGAGG
CGATCAGCAAGCATCCGATCCAGTTCGACGAGCTCTATCGCAACCTGGTCAAGGCCGGCGAAGGCGCAGGCGTGCTGGAG
ACCGTGCTGGAGACGGTCGCGACCTACAAGGAAAACATCGAAGCGCTGAAGGGCAAGATCAAGAAGGCCTTGTTCTACCC
GGCCATGGTCATGGCGGTCGCCCTGCTGGTCAGTTCGATCCTGCTGGTGTGGGTGGTGCCGCAGTTCGAGGATGTGTTCA
AGGGCTTTGGTGCGGAGCTGCCGGCGTTTACCCAGATGATCGTAGCTGCATCGCGCTTCATGGTTGCCTATTGGTGGATG
CTGCTGATCGTCTTGGTCGGCACCATCGTCGGCTTCATCTTCGCCTACAAACGCTCGCCGTCGATGCAGCACGGCATGGA
CCGGCTGATTCTGAAGGTACCGATCATCGGCCAGATCATGCACAACAGCTCGGTGGCACGCTTCTCGCGGACGCTGGGCG
TGACCTTCCGCGCCGGCGTGCCCCTGGTGGAGGCGCTGGACATCGTCGCCGGCGCCACCGGCAATAGCGTGTACGAAAAA
GCGGTGCTGCGCATGCGCGACGACGTGTCGGTCGGCTACCCGGTCAACGTGGCGATGAAGCAGACCAACCTGTTTCCGCA
TATGGTCATCCAGATGACCGCCATCGGCGAAGAGGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTGGATGCGCTGAGCAGCCTGATCGAGCCGTTGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCCATCTTTAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.511

0.511
  pilC Legionella pneumophila strain ERS1305867

51.733

96.42

0.499
  pilC Acinetobacter baylyi ADP1

50.735

97.375

0.494
  pilC Acinetobacter baumannii D1279779

50.735

97.375

0.494
  pilG Neisseria gonorrhoeae MS11

43.216

94.988

0.411
  pilC Vibrio cholerae strain A1552

42.469

96.659

0.41
  pilG Neisseria meningitidis 44/76-A

42.607

95.227

0.406
  pilC Vibrio campbellii strain DS40M4

40.05

94.749

0.379
  pilC Thermus thermophilus HB27

39.25

95.465

0.375