Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NUT31_RS12170 Genome accession   NZ_CP102454
Coordinates   2762298..2762618 (+) Length   106 a.a.
NCBI ID   WP_268013671.1    Uniprot ID   -
Organism   Aeromonas sp. BC14     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2757298..2767618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUT31_RS12145 (NUT31_12140) - 2757936..2758571 (-) 636 WP_016351856.1 hemolysin III family protein -
  NUT31_RS12150 (NUT31_12145) - 2758796..2760301 (+) 1506 WP_268013667.1 aminotransferase class V-fold PLP-dependent enzyme -
  NUT31_RS12155 (NUT31_12150) - 2760406..2760957 (+) 552 WP_252411342.1 septation protein A -
  NUT31_RS12160 (NUT31_12155) - 2760983..2761279 (+) 297 WP_005309589.1 YciI family protein -
  NUT31_RS12165 (NUT31_12160) cysQ 2761360..2762130 (-) 771 WP_268013669.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NUT31_RS12170 (NUT31_12165) comEA 2762298..2762618 (+) 321 WP_268013671.1 ComEA family DNA-binding protein Machinery gene
  NUT31_RS12175 (NUT31_12170) galU 2762713..2763624 (+) 912 WP_268013673.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NUT31_RS12180 (NUT31_12175) - 2763838..2765235 (+) 1398 WP_268013675.1 peptide MFS transporter -
  NUT31_RS12185 (NUT31_12180) - 2765308..2766279 (-) 972 WP_268013676.1 response regulator -
  NUT31_RS12190 (NUT31_12185) - 2766619..2767296 (+) 678 WP_187267994.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11247.07 Da        Isoelectric Point: 9.5773

>NTDB_id=717121 NUT31_RS12170 WP_268013671.1 2762298..2762618(+) (comEA) [Aeromonas sp. BC14]
MNYKTLTATLLLSCLPLFSQPLLAADKPAAKPATTVTATKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=717121 NUT31_RS12170 WP_268013671.1 2762298..2762618(+) (comEA) [Aeromonas sp. BC14]
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGTTCAGCCAGCCTCTGCTGGCCGCCGACAA
GCCTGCTGCCAAGCCGGCAACCACGGTCACCGCCACCAAGGAGAGCGGCAAGGTGAACCTCAACACCGCCAGTATCAATG
AGTTGACTGCGCTCAAGGGCATTGGCGAGAAGAAGGCACAGGCCATCGTCGATTACCGCGAGAAGCAGGGCAAGTTCACT
ACCGTGGATCAGCTGGCCGATGTGAGCGGTATCGGACCCGCCACGCTGGAAGCAAATCGGGACATGATTATCGTCAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

50.909

100

0.528
  comEA Vibrio cholerae strain A1552

50.909

100

0.528
  comE1/comEA Haemophilus influenzae Rd KW20

44.144

100

0.462
  comEA/comE1 Glaesserella parasuis strain SC1401

46.535

95.283

0.443
  comEA Vibrio parahaemolyticus RIMD 2210633

47.959

92.453

0.443
  comEA Acinetobacter baylyi ADP1

47.059

80.189

0.377
  comEA/celA/cilE Streptococcus mitis NCTC 12261

51.316

71.698

0.368
  comEA Legionella pneumophila str. Paris

38.235

96.226

0.368
  comEA Legionella pneumophila strain ERS1305867

38.235

96.226

0.368