Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NQ540_RS03670 Genome accession   NZ_CP102283
Coordinates   713152..714405 (+) Length   417 a.a.
NCBI ID   WP_039848733.1    Uniprot ID   -
Organism   Granulicatella adiacens ATCC 49175     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 708152..719405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ540_RS03630 (NQ540_03630) comGB 708667..709653 (+) 987 WP_233420201.1 competence type IV pilus assembly protein ComGB -
  NQ540_RS03635 (NQ540_03635) comGC 709655..709960 (+) 306 WP_065427295.1 competence type IV pilus major pilin ComGC -
  NQ540_RS03640 (NQ540_03640) comGD 709963..710391 (+) 429 WP_005605082.1 competence type IV pilus minor pilin ComGD -
  NQ540_RS03645 (NQ540_03645) - 710369..710734 (+) 366 WP_005605083.1 hypothetical protein -
  NQ540_RS03650 (NQ540_03650) - 710694..711206 (+) 513 WP_039848731.1 type II secretion system protein -
  NQ540_RS03655 (NQ540_03655) - 711193..711543 (+) 351 WP_005605086.1 hypothetical protein -
  NQ540_RS03660 (NQ540_03660) - 711630..712475 (+) 846 WP_223429376.1 helix-turn-helix domain-containing protein -
  NQ540_RS03665 (NQ540_03665) pgsA 712486..713079 (+) 594 WP_039848732.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NQ540_RS03670 (NQ540_03670) cinA 713152..714405 (+) 1254 WP_039848733.1 competence/damage-inducible protein A Machinery gene
  NQ540_RS03675 (NQ540_03675) recA 714491..715537 (+) 1047 WP_005605090.1 recombinase RecA Machinery gene
  NQ540_RS03680 (NQ540_03680) - 715615..716169 (+) 555 WP_005608245.1 transposase -
  NQ540_RS03685 (NQ540_03685) - 716148..716999 (+) 852 WP_233420212.1 IS3 family transposase -
  NQ540_RS03690 (NQ540_03690) - 717162..718832 (+) 1671 WP_039848734.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 46299.73 Da        Isoelectric Point: 4.7796

>NTDB_id=715841 NQ540_RS03670 WP_039848733.1 713152..714405(+) (cinA) [Granulicatella adiacens ATCC 49175]
MNAEIIAVGTELLMGQIVNTNSAYLAQELAKNSIPTYYQQVVGDNEERMVEAIELAASRSDLIILSGGLGPTTDDITKQV
LARFLEVPLVEDKKALQKVIEFHVRSHRDMSENNRRQALAFEGGTVFKNHNGLAVGCGFEKDGRQFIVLPGPPNELKMMM
QKEVLPFLRKKVGKVDLFESRYLRFFGIGESRLVTILENLIEEQTNPTIAPYAGKFEVMLRLTANGETEEECRDLLDGME
LLIQSQVGEFFYGYGDHNTLQEVTVDLLKESGLTIACAESLTGGLFAASVVAFEGSSSYFQGGTVAYQREAKETQLGIDS
TLLDQYGMVSAECAKAMAEQARLHYQSDLGISFTGVAGPSEMEGKEVGTIFVALASRTDVEVLELHLARNRNDNREFAVQ
HGWNLLRKYFLKQVRTK

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=715841 NQ540_RS03670 WP_039848733.1 713152..714405(+) (cinA) [Granulicatella adiacens ATCC 49175]
ATGAATGCGGAAATTATAGCAGTCGGAACTGAACTACTTATGGGTCAAATTGTAAATACGAATAGCGCGTATTTAGCTCA
AGAATTGGCGAAAAATTCGATTCCAACTTACTATCAACAAGTAGTTGGCGATAATGAAGAAAGAATGGTTGAAGCGATTG
AATTGGCTGCTTCAAGAAGTGATTTGATTATTCTCTCTGGCGGACTTGGGCCAACAACAGATGATATTACCAAGCAAGTA
TTGGCGCGCTTTTTAGAAGTGCCCCTAGTTGAAGATAAAAAAGCTCTTCAAAAAGTGATTGAGTTTCATGTGCGTTCTCA
TAGGGATATGAGTGAAAATAATCGTAGACAGGCATTAGCCTTTGAAGGTGGAACGGTTTTTAAAAATCATAACGGACTTG
CAGTAGGGTGCGGTTTTGAAAAAGATGGCCGACAATTCATTGTTTTACCTGGACCACCAAATGAATTGAAAATGATGATG
CAAAAAGAAGTGTTGCCTTTCTTACGTAAGAAAGTGGGCAAAGTGGATTTATTTGAATCACGTTACTTACGCTTCTTTGG
AATTGGAGAATCACGCTTAGTAACCATTTTAGAAAATCTAATTGAAGAACAAACAAATCCGACGATTGCACCATATGCTG
GTAAATTTGAAGTAATGCTTCGTTTAACGGCCAATGGTGAAACAGAAGAAGAGTGCAGAGATCTTCTTGATGGAATGGAA
CTACTTATCCAATCGCAAGTAGGAGAATTTTTCTATGGATACGGGGACCACAATACATTACAAGAAGTCACTGTTGATTT
ACTAAAAGAATCAGGTCTTACGATTGCTTGCGCTGAAAGTTTAACGGGTGGATTGTTTGCAGCAAGTGTCGTTGCCTTTG
AAGGAAGCTCATCCTACTTCCAAGGAGGAACAGTCGCTTATCAAAGAGAAGCGAAAGAAACGCAACTAGGAATCGATAGT
ACCTTGCTGGATCAATACGGAATGGTTAGTGCAGAATGTGCCAAGGCCATGGCGGAACAAGCAAGACTCCATTATCAAAG
TGATTTAGGCATTTCATTTACGGGAGTTGCAGGGCCAAGTGAAATGGAAGGAAAAGAAGTCGGAACGATTTTCGTCGCAT
TAGCTTCCAGGACAGACGTAGAAGTTCTTGAATTACACCTTGCACGTAATCGTAACGATAATCGTGAATTCGCAGTACAA
CATGGATGGAATTTACTCAGAAAATATTTTTTAAAACAAGTTCGAACAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

49.286

100

0.496
  cinA Streptococcus pneumoniae Rx1

49.048

100

0.494
  cinA Streptococcus pneumoniae R6

49.048

100

0.494
  cinA Streptococcus pneumoniae D39

48.81

100

0.492
  cinA Streptococcus mitis SK321

48.095

100

0.484
  cinA Streptococcus mutans UA159

48.441

100

0.484
  cinA Streptococcus mitis NCTC 12261

47.857

100

0.482
  cinA Bacillus subtilis subsp. subtilis str. 168

46.552

97.362

0.453
  cinA Streptococcus suis isolate S10

39.659

98.561

0.391