Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NQZ90_RS00355 Genome accession   NZ_CP102148
Coordinates   64068..65249 (+) Length   393 a.a.
NCBI ID   WP_257110267.1    Uniprot ID   -
Organism   Streptococcus suis strain DNC15     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 59068..70249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ90_RS00340 (NQZ90_00340) mutL 60206..62143 (+) 1938 WP_257110266.1 DNA mismatch repair endonuclease MutL -
  NQZ90_RS00345 (NQZ90_00345) ruvA 62182..62772 (+) 591 WP_004194470.1 Holliday junction branch migration protein RuvA -
  NQZ90_RS00350 (NQZ90_00350) - 63462..64031 (+) 570 WP_024398416.1 DNA-3-methyladenine glycosylase I -
  NQZ90_RS00355 (NQZ90_00355) cinA 64068..65249 (+) 1182 WP_257110267.1 competence/damage-inducible protein A Machinery gene
  NQZ90_RS00360 (NQZ90_00360) recA 65301..66452 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  NQZ90_RS00365 (NQZ90_00365) spx 66688..67086 (+) 399 WP_203200657.1 transcriptional regulator Spx -
  NQZ90_RS00370 (NQZ90_00370) - 67186..67452 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  NQZ90_RS00375 (NQZ90_00375) ruvX 67452..67871 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  NQZ90_RS00380 (NQZ90_00380) - 67883..68203 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  NQZ90_RS00385 (NQZ90_00385) - 68410..68988 (+) 579 WP_044668626.1 nucleotidyltransferase family protein -
  NQZ90_RS00390 (NQZ90_00390) rpsJ 69659..69967 (+) 309 WP_002939332.1 30S ribosomal protein S10 -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42931.85 Da        Isoelectric Point: 4.4397

>NTDB_id=714977 NQZ90_RS00355 WP_257110267.1 64068..65249(+) (cinA) [Streptococcus suis strain DNC15]
MKAELIAVGTEILTGQIINTNAQFLSEKCAELGIDVYFHTAVGDNENRLLSVLEVASQRSDLVILCGGLGPTEDDLTKQT
LATFLGRNLVFDKLAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIILPGPPSELKAM
FSESLLPLLSQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKATSQEEANLRLNQLEEE
ILQHDKLADYFYAYGEDNSLVKTVATRLAEKRQTIAIVEQGTGGLLQAELSLTLADQPYFSGGKVIGQLGTESGRLSEEA
DCIRQELQADLGLAVSVLIKPESTEDNVLAKVYLALATTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=714977 NQZ90_RS00355 WP_257110267.1 64068..65249(+) (cinA) [Streptococcus suis strain DNC15]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGTCAAATCATTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATGTTTATTTCCACACAGCTGTTGGAGATAATGAAAACAGGCTTCTGTCTGTACTGG
AAGTAGCCAGTCAGCGGAGCGACTTGGTCATTCTCTGTGGAGGACTTGGTCCAACTGAGGATGACTTGACCAAGCAGACC
TTGGCGACCTTCTTAGGTAGAAATCTTGTGTTTGATAAGTTGGCTATGGCAAAATTAGACCGTTTCTTTGCCAGTCGCCC
AGGTCGTGTCCGTACACCAAATAATGAACGTCAGGCACAGATTGTGGAAGGAAGTCAGGCGCTACAGAATCCAGCCGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTAACCTATATTATTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATG
TTTTCTGAGAGTCTCTTACCTTTACTGTCCCAATCTCAGCAGCAACTTTATTCGCGTGTCCTACGCTTTTTTGGAATTGG
CGAAAGCCAGTTGGTGACTGTTTTGGCGGACTTGATTGACAAGCAGACAGACCCAACTCTTGCTCCTTATGCAAAAGTTG
GAGAGGTGACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAAGAAGCAAATCTACGTTTAAATCAGTTGGAAGAGGAA
ATCTTACAACATGACAAACTGGCAGACTATTTCTATGCCTACGGAGAGGACAATAGTTTGGTCAAAACGGTAGCGACTCG
TTTGGCGGAGAAAAGACAAACCATCGCTATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTGAGCCTGACTT
TGGCTGATCAGCCGTATTTTAGCGGAGGAAAAGTTATCGGTCAGCTAGGGACAGAATCGGGCAGGCTATCAGAGGAAGCT
GACTGCATTCGGCAGGAGCTGCAAGCTGATTTAGGTTTGGCTGTGTCTGTGCTTATCAAACCGGAATCAACAGAGGACAA
CGTACTTGCAAAAGTATATCTCGCTTTGGCTACGACCTCGGGTATTTCCCAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

95.929

100

0.959
  cinA Streptococcus mutans UA159

56.934

100

0.595
  cinA Streptococcus pneumoniae R6

56.01

100

0.593
  cinA Streptococcus mitis SK321

56.01

100

0.593
  cinA Streptococcus pneumoniae TIGR4

56.01

100

0.593
  cinA Streptococcus pneumoniae Rx1

56.01

100

0.593
  cinA Streptococcus mitis NCTC 12261

55.769

100

0.59
  cinA Streptococcus pneumoniae D39

55.769

100

0.59
  cinA Bacillus subtilis subsp. subtilis str. 168

41.176

99.491

0.41