Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NQZ91_RS08570 Genome accession   NZ_CP102145
Coordinates   1709587..1710087 (+) Length   166 a.a.
NCBI ID   WP_172073633.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1704587..1715087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS08545 (NQZ91_08545) - 1705563..1706444 (+) 882 WP_105111306.1 class II fructose-bisphosphate aldolase -
  NQZ91_RS08550 (NQZ91_08550) rpmB 1706774..1706962 (+) 189 WP_001140948.1 50S ribosomal protein L28 -
  NQZ91_RS08555 (NQZ91_08555) - 1707094..1707459 (+) 366 WP_105111305.1 Asp23/Gls24 family envelope stress response protein -
  NQZ91_RS08560 (NQZ91_08560) - 1707462..1709126 (+) 1665 WP_172023624.1 DAK2 domain-containing protein -
  NQZ91_RS08565 (NQZ91_08565) rpsF 1709285..1709575 (+) 291 WP_105111495.1 30S ribosomal protein S6 -
  NQZ91_RS08570 (NQZ91_08570) ssb 1709587..1710087 (+) 501 WP_172073633.1 single-stranded DNA-binding protein Machinery gene
  NQZ91_RS08575 (NQZ91_08575) rpsR 1710120..1710359 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  NQZ91_RS08580 (NQZ91_08580) - 1710563..1710880 (+) 318 Protein_1662 transposase -
  NQZ91_RS08585 (NQZ91_08585) - 1710949..1711731 (-) 783 WP_172060235.1 ABC transporter permease -
  NQZ91_RS08590 (NQZ91_08590) - 1711733..1712512 (-) 780 WP_257117337.1 ABC-2 family transporter protein -
  NQZ91_RS08595 (NQZ91_08595) - 1712505..1713488 (-) 984 WP_257117338.1 ATP-binding cassette domain-containing protein -
  NQZ91_RS08600 (NQZ91_08600) - 1713699..1714592 (+) 894 WP_257104903.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18302.08 Da        Isoelectric Point: 4.7294

>NTDB_id=714963 NQZ91_RS08570 WP_172073633.1 1709587..1710087(+) (ssb) [Streptococcus suis strain DNS20]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGAYQSNPGNSFAGGNDFGSSYQAPAQSTPNFAREESPFGASNPMDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=714963 NQZ91_RS08570 WP_172073633.1 1709587..1710087(+) (ssb) [Streptococcus suis strain DNS20]
ATGATAAATAATGTAGTATTGGTTGGTCGCATGACCCGCGATGCAGAACTTCGTTACACTCCGTCAAACCAAGCTGTTGC
GACTTTTACACTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGCGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGCCAACAAGCTGAAAACTTAGCAAATTGGGCTAAAAAAGGTGCTCTGATTGGGGTTACAGGTCGAATTCAGACTCGT
AGCTATGATAACCAACAAGGGCAACGTGTCTATGTGACTGAGGTGGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGACAAGGTGGAGCTTATCAATCAAACCCAGGCAACTCGTTTGCTGGTGGAAATGATTTTGGTTCATCCT
ACCAAGCACCTGCACAATCTACACCGAACTTCGCTCGAGAAGAAAGTCCATTTGGTGCATCAAACCCAATGGATATTTCA
GACGATGACCTACCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.584
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.747

100

0.584
  ssbB/cilA Streptococcus pneumoniae TIGR4

48.8

75.301

0.367
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

65.663

0.361
  ssbB/cilA Streptococcus pneumoniae R6

48

75.301

0.361
  ssbB/cilA Streptococcus mitis SK321

48

75.301

0.361
  ssbB/cilA Streptococcus mitis NCTC 12261

48

75.301

0.361
  ssbB/cilA Streptococcus pneumoniae Rx1

48

75.301

0.361
  ssbB/cilA Streptococcus pneumoniae D39

48

75.301

0.361