Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   NQZ97_RS00845 Genome accession   NZ_CP102136
Coordinates   141114..142151 (+) Length   345 a.a.
NCBI ID   WP_249338910.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 136114..147151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS00815 (NQZ97_00815) - 136257..137150 (+) 894 WP_105152399.1 PEP phosphonomutase -
  NQZ97_RS00820 (NQZ97_00820) - 137159..137479 (+) 321 WP_029173981.1 PTS sugar transporter subunit IIB -
  NQZ97_RS00825 (NQZ97_00825) - 137483..137824 (+) 342 WP_105152398.1 PTS lactose/cellobiose transporter subunit IIA -
  NQZ97_RS00830 (NQZ97_00830) - 137824..139179 (+) 1356 WP_105152397.1 PTS sugar transporter subunit IIC -
  NQZ97_RS00835 (NQZ97_00835) - 139198..140166 (-) 969 WP_105152396.1 S66 peptidase family protein -
  NQZ97_RS00840 (NQZ97_00840) comYA 140252..141202 (+) 951 WP_043026808.1 competence type IV pilus ATPase ComGA Machinery gene
  NQZ97_RS00845 (NQZ97_00845) comYB 141114..142151 (+) 1038 WP_249338910.1 competence type IV pilus assembly protein ComGB Machinery gene
  NQZ97_RS00850 (NQZ97_00850) comYC 142153..142434 (+) 282 WP_043026803.1 competence type IV pilus major pilin ComGC Machinery gene
  NQZ97_RS00855 (NQZ97_00855) comGD 142415..142822 (+) 408 WP_105152395.1 competence type IV pilus minor pilin ComGD -
  NQZ97_RS00860 (NQZ97_00860) comYE 142794..143087 (+) 294 WP_043026799.1 competence type IV pilus minor pilin ComGE Machinery gene
  NQZ97_RS00865 (NQZ97_00865) comGF/cglF 143074..143508 (+) 435 WP_043026797.1 competence type IV pilus minor pilin ComGF Machinery gene
  NQZ97_RS00870 (NQZ97_00870) comGG 143486..144013 (+) 528 WP_043026795.1 competence type IV pilus minor pilin ComGG -
  NQZ97_RS00875 (NQZ97_00875) comYH 144070..145023 (+) 954 WP_256787745.1 class I SAM-dependent methyltransferase Machinery gene
  NQZ97_RS00880 (NQZ97_00880) - 145074..146261 (+) 1188 WP_099871820.1 acetate kinase -
  NQZ97_RS00885 (NQZ97_00885) - 146578..147129 (+) 552 WP_256787742.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38862.84 Da        Isoelectric Point: 9.1395

>NTDB_id=714612 NQZ97_RS00845 WP_249338910.1 141114..142151(+) (comYB) [Streptococcus suis strain M105052_S26]
MNKLIAFLQQDISVFGRQKQKKLPLARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLGHIQSYLENVSKVRKKLIEVATYPVILLAFLLLIMLGLKNYLLPQLEEGNAATM
LINHLPTIFLSLCGLSLVAVLAGMVWFRKTNKIKVFSCLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQS
QQSQLFREIGQDLEQSLSNGQSFHEHVKTYAFFKRELSLIVEYGQVKSKLGSELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=714612 NQZ97_RS00845 WP_249338910.1 141114..142151(+) (comYB) [Streptococcus suis strain M105052_S26]
ATGAACAAATTGATCGCCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTACCCTTGGCTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCTAGTGGTTTTCATCTGGGAGAGATTGTTGATTTCCTCAAAC
GCAGTCAGCTTCTGGCAGATCCCTATACCCAGGTCTTGTCAGACGGGCTGTTAGCAGGCAAACCCTTTTCAAGTTTGCTG
GCGGATTTGCGTTTTTCAGATGCGGTGGTCACGCAAGTAGCTCTGGCAGAAGTTCATGGCAATACCAGTCTGAGTTTGGG
CCATATTCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAAAAGCTGATTGAGGTGGCGACCTATCCAGTTATACTGC
TTGCTTTTCTTCTTTTGATTATGTTGGGTTTGAAAAATTACCTTCTGCCCCAGTTGGAGGAAGGCAATGCTGCGACTATG
CTGATAAATCATCTGCCGACTATCTTTTTATCCCTCTGTGGACTTAGTTTGGTGGCGGTCTTAGCTGGTATGGTTTGGTT
TCGCAAAACCAACAAAATCAAGGTCTTTTCCTGCTTAGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATCTAA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGCTTGGACCTGCCGCAGATTGTGGGTTTGATGCAATCG
CAGCAATCGCAGCTCTTTCGAGAGATTGGCCAGGACCTGGAGCAGTCGCTCTCAAATGGTCAGAGCTTTCATGAACACGT
TAAGACCTATGCCTTTTTTAAGCGGGAGCTGAGTTTGATTGTCGAGTACGGTCAGGTCAAGTCCAAGTTGGGGAGCGAGT
TGACAGTTTATGCGGCTGAATGTTGGGAGGATTTTTTCTCTCGGGTCAATAGAGCCATGCAGCTGATCCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

62.865

99.13

0.623
  comGB/cglB Streptococcus mitis NCTC 12261

60.299

97.101

0.586
  comGB/cglB Streptococcus mitis SK321

60

97.101

0.583
  comYB Streptococcus mutans UA140

58.944

98.841

0.583
  comYB Streptococcus mutans UA159

58.944

98.841

0.583
  comGB/cglB Streptococcus pneumoniae Rx1

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae D39

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae R6

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae TIGR4

59.701

97.101

0.58
  comGB Lactococcus lactis subsp. cremoris KW2

51.039

97.681

0.499