Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   NQZ97_RS00860 Genome accession   NZ_CP102136
Coordinates   142794..143087 (+) Length   97 a.a.
NCBI ID   WP_043026799.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 137794..148087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS00830 (NQZ97_00830) - 137824..139179 (+) 1356 WP_105152397.1 PTS sugar transporter subunit IIC -
  NQZ97_RS00835 (NQZ97_00835) - 139198..140166 (-) 969 WP_105152396.1 S66 peptidase family protein -
  NQZ97_RS00840 (NQZ97_00840) comYA 140252..141202 (+) 951 WP_043026808.1 competence type IV pilus ATPase ComGA Machinery gene
  NQZ97_RS00845 (NQZ97_00845) comYB 141114..142151 (+) 1038 WP_249338910.1 competence type IV pilus assembly protein ComGB Machinery gene
  NQZ97_RS00850 (NQZ97_00850) comYC 142153..142434 (+) 282 WP_043026803.1 competence type IV pilus major pilin ComGC Machinery gene
  NQZ97_RS00855 (NQZ97_00855) comGD 142415..142822 (+) 408 WP_105152395.1 competence type IV pilus minor pilin ComGD -
  NQZ97_RS00860 (NQZ97_00860) comYE 142794..143087 (+) 294 WP_043026799.1 competence type IV pilus minor pilin ComGE Machinery gene
  NQZ97_RS00865 (NQZ97_00865) comGF/cglF 143074..143508 (+) 435 WP_043026797.1 competence type IV pilus minor pilin ComGF Machinery gene
  NQZ97_RS00870 (NQZ97_00870) comGG 143486..144013 (+) 528 WP_043026795.1 competence type IV pilus minor pilin ComGG -
  NQZ97_RS00875 (NQZ97_00875) comYH 144070..145023 (+) 954 WP_256787745.1 class I SAM-dependent methyltransferase Machinery gene
  NQZ97_RS00880 (NQZ97_00880) - 145074..146261 (+) 1188 WP_099871820.1 acetate kinase -
  NQZ97_RS00885 (NQZ97_00885) - 146578..147129 (+) 552 WP_256787742.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10813.71 Da        Isoelectric Point: 9.0778

>NTDB_id=714614 NQZ97_RS00860 WP_043026799.1 142794..143087(+) (comYE) [Streptococcus suis strain M105052_S26]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQTKQDDLALNGVAVQVQRTED
KIVVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=714614 NQZ97_RS00860 WP_043026799.1 142794..143087(+) (comYE) [Streptococcus suis strain M105052_S26]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTACTAGAAAGTCTGGTTGCCCTTGCGACCTTAGTGACTAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGCTTGGGAATTGGAACAACAGGAAGTTCTCAATC
TGGCTCAGATGGCTGTCCAGACAAAACAAGATGACCTAGCCTTAAACGGAGTTGCAGTTCAGGTTCAACGAACAGAGGAT
AAGATTGTTGTTTTCCACGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

53.608

100

0.536
  comYE Streptococcus mutans UA159

53.608

100

0.536
  comGE/cglE Streptococcus pneumoniae Rx1

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae D39

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae R6

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae TIGR4

41.304

94.845

0.392
  comGE/cglE Streptococcus mitis SK321

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis NCTC 12261

40.217

94.845

0.381