Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NQU59_RS04925 Genome accession   NZ_CP102099
Coordinates   1033136..1035271 (+) Length   711 a.a.
NCBI ID   WP_257066167.1    Uniprot ID   -
Organism   Acinetobacter colistiniresistens strain C-214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1028136..1040271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU59_RS04905 (NQU59_04905) comM 1030096..1031154 (+) 1059 WP_005238361.1 pilus assembly protein PilM Machinery gene
  NQU59_RS04910 (NQU59_04910) pilN 1031154..1031804 (+) 651 WP_005238362.1 PilN domain-containing protein Machinery gene
  NQU59_RS04915 (NQU59_04915) comO 1031801..1032544 (+) 744 WP_043973348.1 type 4a pilus biogenesis protein PilO Machinery gene
  NQU59_RS04920 (NQU59_04920) pilP 1032547..1033074 (+) 528 WP_005238366.1 pilus assembly protein PilP Machinery gene
  NQU59_RS04925 (NQU59_04925) pilQ 1033136..1035271 (+) 2136 WP_257066167.1 type IV pilus secretin PilQ Machinery gene
  NQU59_RS04930 (NQU59_04930) aroK 1035291..1035851 (+) 561 WP_005238370.1 shikimate kinase AroK -
  NQU59_RS04935 (NQU59_04935) aroB 1035872..1036954 (+) 1083 WP_257065240.1 3-dehydroquinate synthase -
  NQU59_RS04940 (NQU59_04940) - 1036974..1037837 (+) 864 WP_043973354.1 hypothetical protein -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 77232.79 Da        Isoelectric Point: 6.3591

>NTDB_id=714395 NQU59_RS04925 WP_257066167.1 1033136..1035271(+) (pilQ) [Acinetobacter colistiniresistens strain C-214]
MNHAFRQFSMAAVAIAVMQVASAQVSMTNIVPMSLADQGTEIRVMFDGLPPQPQAYQLEQPARLILDFDKAQQSLKQNSI
PVSTAEASSVEVASDDQRARVIVNLKDAGAFTTRVEGNTFVLKINSAKPTVNAASVVTRQLQQGVSNIGFQRGSQGEGLV
VIDLLGNNTPVDVQQQGSKIVVRTMGNKIPTHLARRLNTNDFATPVASVDAYNDKGNGVITIQSAGSYEYMAYQAENKLT
ISLKRPVDNSPTKAKAQTYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKAVAQSVKLAPLQTEYIKLNYAKATDLEKLITQGKNVNNNSSSPSSGSVSNDTLT
GGLLSPRGTISVDPRTNTLIVNDTSQKIDQIRKMVDLLDVSVKQVMIEARIVSASTDFTKEMGVKWGILSQGITKNNDLL
VGGSDTTLWNLRKPEKDSDTGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKV
MTADKQPAKIESGKKIPYTSSTGGGANAVPKTEFIDATLSLDVTPSITPDGKVMMKLNITKDSQSTPTPTGQLTINKNQI
DTNVLVDNGETVVLGGIFEQENVSSQVKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=714395 NQU59_RS04925 WP_257066167.1 1033136..1035271(+) (pilQ) [Acinetobacter colistiniresistens strain C-214]
ATGAATCATGCATTCCGTCAATTTTCTATGGCTGCTGTTGCGATTGCGGTGATGCAAGTGGCATCAGCACAAGTCAGCAT
GACCAATATCGTACCAATGAGCTTGGCCGATCAAGGCACAGAAATTCGTGTGATGTTTGATGGTCTACCTCCACAGCCGC
AAGCTTATCAACTCGAGCAGCCTGCTCGTTTGATTCTGGATTTTGATAAAGCGCAACAGAGTTTAAAACAAAATTCAATT
CCCGTATCTACAGCTGAAGCCAGTTCAGTGGAAGTTGCATCAGATGACCAACGTGCTCGTGTGATTGTGAATTTAAAAGA
TGCAGGTGCATTTACGACCCGTGTTGAGGGAAATACCTTTGTTCTCAAAATTAATTCTGCAAAGCCTACTGTGAATGCAG
CATCGGTTGTTACACGTCAGCTACAACAGGGGGTTTCAAATATTGGTTTCCAGCGAGGAAGCCAAGGTGAAGGTTTGGTC
GTCATTGATTTGTTGGGAAATAATACGCCTGTCGATGTACAGCAGCAAGGGAGTAAAATTGTTGTCCGAACCATGGGGAA
TAAGATCCCAACCCATTTGGCACGTCGTTTAAATACCAATGATTTTGCCACTCCGGTCGCGAGTGTGGATGCTTATAACG
ACAAGGGGAATGGTGTGATTACCATTCAATCTGCAGGGAGCTATGAATATATGGCTTATCAGGCAGAGAATAAATTGACT
ATTAGTTTGAAACGTCCTGTAGACAACTCTCCAACCAAAGCCAAGGCACAAACCTATACGGGGAATAAGATTTCTCTGGA
TTTCCAAGATATTGAAGTGCGTCGAGTATTGCAGTTATTGGCCGACTTTACCGGCATCAATATGGTGGCAGCCGATACGG
TACAGGGTAATATTACCTTACGCCTCAAAGATGTACCTTGGGATCAGGCACTTGATATTGTATTAAAGACCAAAAATCTG
GATAAGCGCCGTAATGGTAATGTGATCTGGATTGCGCCTGTTTCTGAACTGATTAAAGCAGAAGAGGAAGAAGCCAAAGC
CGTTGCACAGAGTGTAAAATTGGCACCGTTACAAACCGAATATATTAAATTAAATTATGCCAAAGCGACGGATCTTGAAA
AACTGATTACACAAGGAAAAAATGTAAATAATAACAGTAGTAGTCCTTCTTCAGGCTCTGTCAGTAACGATACTTTGACA
GGTGGATTACTGAGTCCACGAGGAACCATTTCCGTTGATCCTCGAACCAATACGCTTATTGTGAACGATACTTCTCAAAA
AATTGATCAAATCCGCAAAATGGTTGATTTGCTCGATGTGTCGGTTAAACAGGTGATGATTGAGGCACGCATTGTCAGCG
CCAGTACAGATTTCACCAAAGAAATGGGAGTGAAGTGGGGGATTCTGTCTCAAGGGATTACCAAAAATAATGACCTGTTG
GTGGGTGGTAGTGATACAACTTTATGGAACTTAAGAAAGCCTGAGAAAGATAGCGATACGGGGGGCTGGAAATATGAAAT
TGAACGTCCGGATAACCTGAATGTCGATTTGGGTGCGGTAACTCCTGGTGCAAGCCGTATTGCTTTCGGTTTAATTAGCT
TGTCTGATTTTATGTTGGACCTTGAGTTGTCTGCTGTGCAAGCAGATGGTTATGGGGAAGTGATTTCGACGCCAAAAGTG
ATGACTGCGGATAAGCAACCAGCAAAAATTGAATCAGGTAAGAAAATTCCTTATACCTCTTCTACGGGAGGCGGTGCCAA
TGCTGTACCTAAAACCGAATTTATTGATGCAACACTCAGCCTTGATGTCACACCAAGTATTACCCCAGATGGTAAGGTAA
TGATGAAGCTGAACATTACCAAAGATTCACAAAGTACACCAACACCAACGGGCCAGTTGACAATTAATAAAAACCAGATT
GATACCAATGTTCTGGTGGATAATGGAGAAACAGTAGTTCTAGGTGGTATTTTTGAACAGGAAAATGTCAGTTCACAGGT
GAAAGTGCCTTTCCTGGGTGATCTGCCATACGTGGGGCGCTTATTCCGTCGTGACCTTAAAACGGATAATAAACGAGAGT
TACTTATTTTTGTGACACCGAGAATTGTTAATGACACTTTGACCAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

AMIN domain (AMIN)

(37-120)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-444)

Bacterial type II and III secretion system protein (Secretin)

(545-703)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.795

100

0.771
  pilQ Acinetobacter baumannii strain A118

75.657

100

0.769
  comQ Acinetobacter baylyi ADP1

72.308

100

0.727
  pilQ Pseudomonas aeruginosa PAK

40.382

100

0.416
  pilQ Legionella pneumophila strain ERS1305867

38.257

95.218

0.364
  pilQ Legionella pneumophila strain Lp02

38.109

95.218

0.363