Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   NQU59_RS04915 Genome accession   NZ_CP102099
Coordinates   1031801..1032544 (+) Length   247 a.a.
NCBI ID   WP_043973348.1    Uniprot ID   -
Organism   Acinetobacter colistiniresistens strain C-214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1026801..1037544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU59_RS04900 (NQU59_04900) ponA 1027317..1029932 (-) 2616 WP_257065239.1 penicillin-binding protein PBP1a -
  NQU59_RS04905 (NQU59_04905) comM 1030096..1031154 (+) 1059 WP_005238361.1 pilus assembly protein PilM Machinery gene
  NQU59_RS04910 (NQU59_04910) pilN 1031154..1031804 (+) 651 WP_005238362.1 PilN domain-containing protein Machinery gene
  NQU59_RS04915 (NQU59_04915) comO 1031801..1032544 (+) 744 WP_043973348.1 type 4a pilus biogenesis protein PilO Machinery gene
  NQU59_RS04920 (NQU59_04920) pilP 1032547..1033074 (+) 528 WP_005238366.1 pilus assembly protein PilP Machinery gene
  NQU59_RS04925 (NQU59_04925) pilQ 1033136..1035271 (+) 2136 WP_257066167.1 type IV pilus secretin PilQ Machinery gene
  NQU59_RS04930 (NQU59_04930) aroK 1035291..1035851 (+) 561 WP_005238370.1 shikimate kinase AroK -
  NQU59_RS04935 (NQU59_04935) aroB 1035872..1036954 (+) 1083 WP_257065240.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27858.44 Da        Isoelectric Point: 4.6737

>NTDB_id=714393 NQU59_RS04915 WP_043973348.1 1031801..1032544(+) (comO) [Acinetobacter colistiniresistens strain C-214]
MSLDKSEDLNQDTVVTKKKKMTVDQFFQQFNTLDMNNYGSWPLSVKITCWIFIFLAVAALGYFLVIKSQLESIDNEQAKE
QSLLNEFKEKDSKLRNLQQYQVQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQP
ISIDATGDYHAFGSFVTGIAALPRIVTLHDFTVEAKEDTQKKSDIPVVNYTVKAKTYRYVGTDDQANNAAGTPAAQTATT
PPAQGGK

Nucleotide


Download         Length: 744 bp        

>NTDB_id=714393 NQU59_RS04915 WP_043973348.1 1031801..1032544(+) (comO) [Acinetobacter colistiniresistens strain C-214]
ATGAGCCTAGATAAATCAGAGGATCTGAATCAAGATACCGTTGTTACCAAGAAAAAGAAAATGACGGTAGATCAATTTTT
CCAGCAATTCAATACGCTGGATATGAATAATTATGGTAGTTGGCCATTATCCGTCAAAATTACTTGCTGGATTTTTATTT
TCTTGGCTGTTGCTGCGCTGGGTTATTTTTTGGTGATTAAGTCTCAGTTGGAGTCGATTGATAATGAACAAGCCAAAGAG
CAAAGTTTATTAAATGAGTTTAAAGAAAAAGACTCAAAGCTACGTAACTTGCAGCAATACCAAGTACAGCTTCAGGAAAT
GGAAGCCAATTTTAATCAACAGTTAGAACAGCTGCCAAAAGAAACGGAAATTCCAAGTCTGGTTGAAGATATTAACTTGA
CAGGGGTGAACTCTGGACTGAAATTTAAAAATATCCGTTTAGAGAATGAGGTCAAGCAAGAGTTCTTTATTGAGCAGCCA
ATCAGTATTGATGCGACAGGGGATTATCATGCTTTTGGCTCATTTGTAACGGGTATTGCTGCTTTACCGCGTATTGTAAC
TTTGCATGACTTTACTGTTGAAGCAAAAGAAGATACACAGAAAAAATCTGATATTCCTGTGGTGAATTATACGGTTAAGG
CAAAAACCTATCGTTATGTTGGCACGGATGATCAAGCTAATAATGCTGCGGGGACACCAGCCGCTCAAACAGCAACTACT
CCACCTGCACAAGGAGGAAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

71.545

99.595

0.713
  pilO Acinetobacter baumannii D1279779

72.131

98.785

0.713