Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NQU59_RS04920 Genome accession   NZ_CP102099
Coordinates   1032547..1033074 (+) Length   175 a.a.
NCBI ID   WP_005238366.1    Uniprot ID   -
Organism   Acinetobacter colistiniresistens strain C-214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1027547..1038074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU59_RS04905 (NQU59_04905) comM 1030096..1031154 (+) 1059 WP_005238361.1 pilus assembly protein PilM Machinery gene
  NQU59_RS04910 (NQU59_04910) pilN 1031154..1031804 (+) 651 WP_005238362.1 PilN domain-containing protein Machinery gene
  NQU59_RS04915 (NQU59_04915) comO 1031801..1032544 (+) 744 WP_043973348.1 type 4a pilus biogenesis protein PilO Machinery gene
  NQU59_RS04920 (NQU59_04920) pilP 1032547..1033074 (+) 528 WP_005238366.1 pilus assembly protein PilP Machinery gene
  NQU59_RS04925 (NQU59_04925) pilQ 1033136..1035271 (+) 2136 WP_257066167.1 type IV pilus secretin PilQ Machinery gene
  NQU59_RS04930 (NQU59_04930) aroK 1035291..1035851 (+) 561 WP_005238370.1 shikimate kinase AroK -
  NQU59_RS04935 (NQU59_04935) aroB 1035872..1036954 (+) 1083 WP_257065240.1 3-dehydroquinate synthase -
  NQU59_RS04940 (NQU59_04940) - 1036974..1037837 (+) 864 WP_043973354.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19299.49 Da        Isoelectric Point: 9.3319

>NTDB_id=714394 NQU59_RS04920 WP_005238366.1 1032547..1033074(+) (pilP) [Acinetobacter colistiniresistens strain C-214]
MNNYKLLLGFLIGVSLVGCDSRIDAVNQKMAEIRNQPPLPIEPAPVFTPVPLFNYSAHQLKSPFMPSSLAAELKIMAGKR
VYPNFNRQPQPLEAYALESLNMKGSMRGKSNDTIALIQTPDGQIERVQVGSYLGMNQGRIIKISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=714394 NQU59_RS04920 WP_005238366.1 1032547..1033074(+) (pilP) [Acinetobacter colistiniresistens strain C-214]
GTGAATAACTATAAATTATTACTTGGCTTTTTAATTGGGGTAAGCCTTGTCGGTTGTGATTCTCGTATTGATGCAGTCAA
TCAAAAGATGGCAGAAATTCGTAATCAGCCGCCGCTGCCGATTGAGCCTGCACCGGTATTTACGCCTGTGCCTTTATTTA
ATTATTCAGCCCATCAGTTGAAAAGCCCATTTATGCCGAGCTCGCTGGCTGCTGAATTAAAGATTATGGCCGGTAAACGT
GTTTATCCGAACTTTAACCGCCAGCCACAGCCACTCGAAGCTTATGCACTGGAGTCGCTGAATATGAAAGGCAGTATGCG
TGGTAAAAGCAATGACACCATTGCGCTGATCCAAACACCAGATGGTCAGATTGAACGTGTACAAGTCGGCAGTTATTTGG
GGATGAATCAGGGACGTATTATTAAAATTAGTCCAACCCAAATTGATTTGGTGGAAATTGTACCTGATGGACGAGAAGGT
TATGTCGAAAGACCTCGCACACTCGTTCTAATTGGGCCAGCGCCGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

81.143

100

0.811
  comL Acinetobacter baylyi ADP1

72.571

100

0.726
  pilP Legionella pneumophila strain ERS1305867

33.508

100

0.366