Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NP165_RS10990 Genome accession   NZ_CP102096
Coordinates   2354637..2355863 (+) Length   408 a.a.
NCBI ID   WP_257084006.1    Uniprot ID   -
Organism   Vibrio japonicus strain JCM 31412     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2349637..2360863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP165_RS10965 (NP165_10965) fldB 2350020..2350541 (+) 522 WP_257084001.1 flavodoxin FldB -
  NP165_RS10970 (NP165_10970) ampD 2350608..2351159 (-) 552 WP_257084002.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NP165_RS10975 (NP165_10975) nadC 2351292..2352194 (+) 903 WP_257084003.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NP165_RS10980 (NP165_10980) - 2352453..2352935 (+) 483 WP_257084004.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NP165_RS10985 (NP165_10985) pilB 2352935..2354623 (+) 1689 WP_257084005.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NP165_RS10990 (NP165_10990) pilC 2354637..2355863 (+) 1227 WP_257084006.1 type II secretion system F family protein Machinery gene
  NP165_RS10995 (NP165_10995) pilD 2355930..2356799 (+) 870 WP_257084007.1 A24 family peptidase Machinery gene
  NP165_RS11000 (NP165_11000) coaE 2356801..2357409 (+) 609 WP_257084008.1 dephospho-CoA kinase -
  NP165_RS11005 (NP165_11005) zapD 2357444..2358184 (+) 741 WP_257084009.1 cell division protein ZapD -
  NP165_RS11010 (NP165_11010) yacG 2358242..2358436 (+) 195 WP_257084010.1 DNA gyrase inhibitor YacG -
  NP165_RS11015 (NP165_11015) rplS 2358638..2358991 (-) 354 WP_257084011.1 50S ribosomal protein L19 -
  NP165_RS11020 (NP165_11020) trmD 2359033..2359776 (-) 744 WP_257085591.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NP165_RS11025 (NP165_11025) rimM 2359801..2360349 (-) 549 WP_257084012.1 ribosome maturation factor RimM -
  NP165_RS11030 (NP165_11030) rpsP 2360376..2360624 (-) 249 WP_005438039.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45071.23 Da        Isoelectric Point: 10.4815

>NTDB_id=714358 NP165_RS10990 WP_257084006.1 2354637..2355863(+) (pilC) [Vibrio japonicus strain JCM 31412]
MKHKHSNQLKNYHWKGVNGTGKQVSGQLLALSEVEVRDKLKTQHIQVRKLKKRNVSFLARITHRVKGKDITILTRQLATM
LVTGVPLILALKLVSDNHRKAEMKSILSQVIKGVESGTPISKSLSVASPHFDQLYIDLVATGEQSGNLPEVFERIATYRE
KSEQLRAKVVKALIYPTMVVLTAIAVSYLMLTKVIPEFESMFSGFGAELPWFTQQVLKISHITQAYGGLTVLTLIALLIS
LKLARKKSFRVRLTSSRIGLRVPIIGGILTKAAIAKFSRTLATSFSAGIPILSSLKTSAKTANNTHYQTAIDSVYEDTAA
GMPMYIAMRNSQSFPEMVLQMVMIGEESGRLDDMLNKVATIYEFEIDNTVDNLGKILEPLIIIFLGVVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=714358 NP165_RS10990 WP_257084006.1 2354637..2355863(+) (pilC) [Vibrio japonicus strain JCM 31412]
ATGAAACACAAACATTCCAACCAGTTGAAAAACTATCACTGGAAAGGCGTCAACGGTACTGGCAAACAAGTTTCAGGACA
ACTGCTGGCGCTCAGTGAAGTTGAAGTCCGGGATAAACTGAAAACGCAACACATACAAGTCAGAAAGCTTAAGAAGCGTA
ACGTTTCATTTCTCGCTCGTATTACGCACAGAGTAAAAGGTAAGGACATCACCATACTCACTCGTCAACTTGCCACCATG
CTGGTTACTGGTGTCCCTCTCATCCTTGCGCTCAAACTGGTTTCCGATAACCATCGCAAGGCCGAAATGAAATCCATTCT
TTCACAAGTGATCAAAGGCGTGGAGTCTGGTACGCCTATCTCCAAATCGTTGAGTGTGGCCAGCCCACATTTTGACCAAC
TGTATATCGACTTAGTCGCGACAGGAGAGCAATCCGGTAACCTTCCAGAAGTGTTTGAGCGCATTGCGACCTATCGTGAA
AAATCAGAACAATTACGCGCAAAAGTGGTGAAAGCGCTTATCTACCCCACCATGGTTGTACTCACAGCAATCGCCGTGTC
TTACTTGATGCTAACCAAAGTGATCCCTGAATTTGAATCCATGTTTAGTGGGTTTGGTGCAGAACTGCCTTGGTTTACTC
AGCAAGTGCTAAAAATATCCCACATCACTCAAGCCTATGGTGGTCTTACGGTTTTGACACTGATTGCCTTGCTGATCAGT
TTAAAACTCGCCCGAAAAAAATCCTTTCGCGTCCGATTAACATCGAGTCGAATAGGCCTGCGTGTTCCAATCATTGGAGG
TATCCTCACCAAAGCAGCTATCGCCAAATTCAGCCGAACCTTAGCAACCAGCTTTAGTGCAGGTATTCCAATACTTTCTA
GTTTAAAGACTTCGGCAAAAACCGCGAATAACACCCACTACCAAACGGCCATTGATAGTGTCTATGAAGATACGGCGGCA
GGAATGCCTATGTATATCGCGATGCGTAACTCTCAGTCGTTTCCAGAAATGGTTTTGCAAATGGTTATGATTGGAGAGGA
GTCTGGTAGGCTGGACGATATGCTCAATAAGGTCGCGACGATCTACGAATTTGAGATAGATAACACGGTCGACAACTTGG
GCAAAATTCTAGAACCACTCATTATCATTTTCCTTGGTGTTGTGGTTGGCGGTTTAGTCGTCGCGATGTACTTACCAATC
TTTAACTTAATGAGCGTGTTAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

75.98

100

0.76
  pilC Vibrio campbellii strain DS40M4

71.072

98.284

0.699
  pilC Acinetobacter baylyi ADP1

41.667

100

0.417
  pilC Acinetobacter baumannii D1279779

40.931

100

0.409
  pilC Legionella pneumophila strain ERS1305867

40.842

99.02

0.404
  pilC Pseudomonas stutzeri DSM 10701

39.646

97.059

0.385
  pilG Neisseria gonorrhoeae MS11

39.386

95.833

0.377
  pilG Neisseria meningitidis 44/76-A

39.386

95.833

0.377