Detailed information NTG0714359

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NP165_RS10995
• Genome accession: NZ_CP102096
• Coordinates: 2355930..2356799 (+)
• Length: 289 a.a.
• NCBI ID: WP_257084007.1
• Uniprot ID: -
• Organism: Vibrio japonicus strain JCM 31412
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2350930..2361799

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NP165_RS10975 (NP165_10975)	nadC	2351292..2352194 (+)	903	WP_257084003.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NP165_RS10980 (NP165_10980)	-	2352453..2352935 (+)	483	WP_257084004.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NP165_RS10985 (NP165_10985)	pilB	2352935..2354623 (+)	1689	WP_257084005.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NP165_RS10990 (NP165_10990)	pilC	2354637..2355863 (+)	1227	WP_257084006.1	type II secretion system F family protein	Machinery gene
NP165_RS10995 (NP165_10995)	pilD	2355930..2356799 (+)	870	WP_257084007.1	A24 family peptidase	Machinery gene
NP165_RS11000 (NP165_11000)	coaE	2356801..2357409 (+)	609	WP_257084008.1	dephospho-CoA kinase	-
NP165_RS11005 (NP165_11005)	zapD	2357444..2358184 (+)	741	WP_257084009.1	cell division protein ZapD	-
NP165_RS11010 (NP165_11010)	yacG	2358242..2358436 (+)	195	WP_257084010.1	DNA gyrase inhibitor YacG	-
NP165_RS11015 (NP165_11015)	rplS	2358638..2358991 (-)	354	WP_257084011.1	50S ribosomal protein L19	-
NP165_RS11020 (NP165_11020)	trmD	2359033..2359776 (-)	744	WP_257085591.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
NP165_RS11025 (NP165_11025)	rimM	2359801..2360349 (-)	549	WP_257084012.1	ribosome maturation factor RimM	-
NP165_RS11030 (NP165_11030)	rpsP	2360376..2360624 (-)	249	WP_005438039.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32176.41 Da
• Isoelectric Point: 7.9138

>NTDB_id=714359 NP165_RS10995 WP_257084007.1 2355930..2356799(+) (pilD) [Vibrio japonicus strain JCM 31412]
MELFNFYPWLFPLLAAVFGLVIGSFLNVVIHRLPIMMEREWRQECAASFPEYNISPPKGVYNLSVPRSTCPKCKTPIRIL
DNIPVLSWLLLRGKCRACGNPISIRYPLVEALTGGLCFLVASQFGFSIFSLALLVFTFVLIAATFIDLDTMLLPDSLTLP
LVWSGVVLALLQVSPVSLQDSVIGALAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPMIILFSSLVGL
VFGLIQLRLKQQGIDQGFPFGPYLAIAGWISMMWGEGILNWYLSNYIGL

Nucleotide

• Length: 870 bp

>NTDB_id=714359 NP165_RS10995 WP_257084007.1 2355930..2356799(+) (pilD) [Vibrio japonicus strain JCM 31412]
ATGGAACTTTTTAATTTCTACCCATGGTTATTTCCGCTTCTCGCAGCCGTATTTGGTTTAGTCATCGGTAGCTTTCTCAA
TGTGGTGATTCATCGCTTACCCATCATGATGGAGCGAGAGTGGCGTCAGGAGTGTGCAGCTAGCTTTCCTGAATACAACA
TATCTCCACCGAAAGGGGTATATAACCTTAGCGTTCCAAGATCGACGTGCCCAAAATGCAAAACACCGATTCGCATCCTT
GACAATATTCCGGTGCTAAGCTGGCTACTCCTAAGAGGAAAATGTCGAGCTTGCGGCAACCCTATCAGCATCCGATACCC
TTTGGTTGAAGCTCTCACCGGAGGACTGTGCTTTTTAGTGGCTTCTCAATTCGGGTTCAGCATTTTTTCGCTTGCCTTAC
TTGTCTTTACCTTTGTCCTCATTGCGGCCACCTTTATCGACCTAGATACAATGCTGCTGCCGGACTCACTCACCCTTCCA
CTCGTTTGGTCTGGCGTTGTACTGGCATTATTGCAAGTTAGCCCAGTCTCATTACAAGATTCAGTGATTGGTGCATTGGC
AGGTTATCTATCTCTATGGTCTGTCTATTGGCTATTTAAGCTCGTGACTGGCAAAGAAGGGATGGGTTATGGTGATTTCA
AACTACTTGCGGCATTAGGCGCTTGGCTAGGCTGGCAATACCTGCCAATGATCATTCTCTTTTCCTCTCTTGTTGGCCTA
GTCTTCGGCTTAATACAACTGAGACTCAAGCAGCAAGGTATCGATCAAGGCTTTCCATTCGGACCGTACTTAGCTATCGC
AGGGTGGATAAGCATGATGTGGGGAGAAGGGATCTTGAACTGGTACTTATCAAACTATATTGGACTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	70.934	100	0.709
pilD	Vibrio cholerae strain A1552	69.097	99.654	0.689
pilD	Acinetobacter baumannii D1279779	53.16	93.08	0.495
pilD	Acinetobacter nosocomialis M2	53.16	93.08	0.495
pilD	Neisseria gonorrhoeae MS11	50.182	95.156	0.478