Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NP165_RS00210 Genome accession   NZ_CP102096
Coordinates   46049..47170 (+) Length   373 a.a.
NCBI ID   WP_257084400.1    Uniprot ID   -
Organism   Vibrio japonicus strain JCM 31412     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 41049..52170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP165_RS00190 (NP165_00190) rsmB 41975..43255 (-) 1281 WP_257084396.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  NP165_RS00195 (NP165_00195) fmt 43351..44298 (-) 948 WP_257084397.1 methionyl-tRNA formyltransferase -
  NP165_RS00200 (NP165_00200) def 44331..44846 (-) 516 WP_257084398.1 peptide deformylase -
  NP165_RS00205 (NP165_00205) - 45012..46052 (+) 1041 WP_257084399.1 LysM peptidoglycan-binding domain-containing protein -
  NP165_RS00210 (NP165_00210) dprA 46049..47170 (+) 1122 WP_257084400.1 DNA-processing protein DprA Machinery gene
  NP165_RS00215 (NP165_00215) - 47167..47646 (+) 480 WP_306439752.1 DUF494 family protein -
  NP165_RS00220 (NP165_00220) - 47661..48242 (+) 582 WP_257084401.1 type I DNA topoisomerase -
  NP165_RS00225 (NP165_00225) - 48281..49420 (-) 1140 WP_257084402.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  NP165_RS00230 (NP165_00230) purE 49425..49910 (-) 486 WP_053408069.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  NP165_RS00235 (NP165_00235) - 50110..50667 (+) 558 WP_257084403.1 L-threonylcarbamoyladenylate synthase -
  NP165_RS00240 (NP165_00240) hemF 50679..51596 (+) 918 WP_257084404.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40148.86 Da        Isoelectric Point: 6.5684

>NTDB_id=714329 NP165_RS00210 WP_257084400.1 46049..47170(+) (dprA) [Vibrio japonicus strain JCM 31412]
MNDVELSAWLALYFTPRIGPKTFQKLTAIDAPRALVESAPSTLQSVGFTDTQIQYLKHKAPQDVEDCVKWLEGAKHRHIL
TLEDVHYPALLKQTGSAPAVLFVEGDVSCLSQHQLAIVGSRNVSIDGLNSARNFAADLVEQGLVITSGLALGVDGYAHDG
ALKGGGKTIAVLGCGLNTIYPARHRSLASRITESGALVSEFHPTAKPKADHFPRRNRIISGLSTGVLVIEAAEKSGSLIT
ARYAAEQGRDVFAIPSSIHNSNGRGCNLLIKQGACLVQTTQDILDEIDVLIRWSNANKPPQQCDLFEEIDSKEGLPFPQL
LANVGNEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYILRGRGKL

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=714329 NP165_RS00210 WP_257084400.1 46049..47170(+) (dprA) [Vibrio japonicus strain JCM 31412]
ATGAATGACGTAGAGCTATCGGCTTGGCTGGCGCTCTATTTTACGCCTAGAATTGGGCCGAAAACCTTTCAGAAGCTGAC
TGCGATCGATGCACCACGAGCATTGGTCGAGTCAGCGCCTTCCACATTGCAATCGGTAGGTTTTACCGACACGCAAATTC
AATACCTTAAGCACAAGGCACCTCAGGATGTCGAGGATTGTGTGAAGTGGTTGGAGGGTGCCAAGCACCGTCATATATTG
ACTCTTGAAGACGTCCATTACCCTGCGTTACTCAAACAAACGGGCAGCGCACCAGCGGTATTGTTCGTTGAAGGTGATGT
GAGCTGCTTATCTCAGCACCAGTTGGCGATCGTTGGCAGTCGCAACGTCAGTATCGATGGCCTAAATTCGGCACGAAATT
TTGCCGCAGACCTGGTAGAGCAAGGATTAGTGATTACTAGTGGTTTGGCACTAGGTGTGGATGGGTATGCTCATGACGGC
GCTTTGAAAGGCGGAGGGAAAACCATCGCCGTGCTTGGGTGTGGGCTCAATACAATTTATCCCGCGCGGCATCGAAGCTT
AGCAAGCCGAATCACTGAAAGTGGTGCCCTTGTTTCTGAGTTCCACCCAACAGCGAAACCGAAAGCTGACCATTTCCCAA
GACGAAACAGAATCATCAGTGGACTATCTACAGGCGTTCTAGTGATAGAGGCCGCTGAAAAAAGTGGATCGCTCATTACT
GCGCGTTATGCGGCAGAGCAAGGTCGGGATGTGTTTGCGATTCCTAGCTCAATACACAATTCAAATGGCCGTGGATGTAA
TCTATTGATTAAACAGGGAGCTTGTTTAGTTCAGACCACCCAAGATATTTTGGATGAAATAGATGTGCTAATTCGTTGGT
CTAATGCCAATAAGCCCCCGCAACAATGCGATCTTTTTGAAGAAATAGATAGCAAAGAAGGATTGCCATTTCCTCAGCTG
TTAGCTAACGTAGGAAATGAAGCGACACCAGTTGATATTCTGGCAAACAGGACCAATATACCTGTGCAAGAAGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCAGGTGGCTATATTCTAAGGGGGAGGGGCAAGCTAT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

62.703

99.196

0.622
  dprA Vibrio cholerae strain A1552

57.412

99.464

0.571
  dprA Legionella pneumophila strain ERS1305867

46.594

98.391

0.458
  dprA Glaesserella parasuis strain SC1401

45.04

100

0.45
  dprA Haemophilus influenzae Rd KW20

41.761

94.37

0.394
  dprA Neisseria gonorrhoeae MS11

36.683

100

0.391
  dprA Neisseria gonorrhoeae strain FA1090

36.432

100

0.389
  dprA Neisseria meningitidis strain C311

36.364

100

0.386
  dprA Neisseria meningitidis MC58

36.364

100

0.386