Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   NQZ84_RS00745 Genome accession   NZ_CP102094
Coordinates   121533..122570 (+) Length   345 a.a.
NCBI ID   WP_044769407.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 116533..127570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS00730 (NQZ84_00730) - 119235..119600 (+) 366 WP_002936568.1 DUF1033 family protein -
  NQZ84_RS00735 (NQZ84_00735) - 119635..120585 (-) 951 WP_257049510.1 S66 family peptidase -
  NQZ84_RS00740 (NQZ84_00740) comYA 120671..121621 (+) 951 WP_044769405.1 competence type IV pilus ATPase ComGA Machinery gene
  NQZ84_RS00745 (NQZ84_00745) comYB 121533..122570 (+) 1038 WP_044769407.1 competence type IV pilus assembly protein ComGB Machinery gene
  NQZ84_RS00750 (NQZ84_00750) comYC 122572..122853 (+) 282 WP_044683533.1 competence type IV pilus major pilin ComGC Machinery gene
  NQZ84_RS00755 (NQZ84_00755) comGD 122834..123241 (+) 408 WP_044685579.1 competence type IV pilus minor pilin ComGD -
  NQZ84_RS00760 (NQZ84_00760) comYE 123213..123506 (+) 294 WP_024413203.1 competence type IV pilus minor pilin ComGE Machinery gene
  NQZ84_RS00765 (NQZ84_00765) comGF/cglF 123493..123927 (+) 435 WP_024389483.1 competence type IV pilus minor pilin ComGF Machinery gene
  NQZ84_RS00770 (NQZ84_00770) comGG 123905..124315 (+) 411 WP_024389482.1 competence type IV pilus minor pilin ComGG -
  NQZ84_RS00775 (NQZ84_00775) comYH 124372..125325 (+) 954 WP_044753390.1 class I SAM-dependent methyltransferase Machinery gene
  NQZ84_RS00780 (NQZ84_00780) - 125375..126562 (+) 1188 WP_014637319.1 acetate kinase -
  NQZ84_RS00785 (NQZ84_00785) - 126877..127428 (+) 552 WP_044752027.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38942.89 Da        Isoelectric Point: 9.3127

>NTDB_id=714282 NQZ84_RS00745 WP_044769407.1 121533..122570(+) (comYB) [Streptococcus suis strain 12RC1]
MNKLIGFLQQDISVFVRQKQKKLPLARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPVILLGFLLLIMLGLKNYLLPQLEEGNAATV
LINHLPTIFLSLSGLSLVAVLAGMVWFRKTNKIKVFSCLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGQDLERSLSNGQSFHEHIKTYAFFKRELSLIVEYGQVKSKLGSELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=714282 NQZ84_RS00745 WP_044769407.1 121533..122570(+) (comYB) [Streptococcus suis strain 12RC1]
ATGAACAAATTGATCGGCTTTTTGCAGCAGGACATATCAGTCTTCGTCAGGCAGAAACAGAAAAAATTGCCCTTGGCTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCCAGCGGTTTTCATCTGGGGGAGATTGTTGATTTCCTCAAAC
GTAGCCAGCTTCTGGCAGATCCCTATACCCAGGTCTTGTCAGACGGGTTGCTGGCAGGCAAACCCTTTTCGAGTTTGCTG
GCAGATTTGCGGTTTTCAGATGCGGTGGTCACACAGGTGGCTCTGGCAGAAGTTCATGGCAATACCAGCCTGAGTTTGAG
CCATATTCAGTCCTATCTGGAAAATGTCAGCAAGGTGCGTAAAAAATTGATCGAAGTGGCAACTTATCCAGTTATCTTGC
TAGGTTTTCTGCTCTTGATTATGCTGGGTTTGAAAAACTATCTTTTACCTCAGTTGGAGGAAGGTAATGCAGCGACAGTG
CTGATTAATCATCTACCGACCATCTTTTTATCTCTAAGTGGACTTAGTTTGGTGGCGGTCTTAGCTGGTATGGTTTGGTT
TCGCAAAACCAATAAAATTAAGGTCTTTTCCTGCTTGGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTACCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGTTTGGACCTGCCGCAGATTGTGGGCTTGATGCAAGAG
CAGCAATCGCAGCTTTTTCGTGAGATTGGTCAGGACCTGGAGCGGTCGCTTTCCAATGGTCAGAGTTTTCACGAACACAT
CAAGACCTACGCCTTTTTTAAGCGGGAGCTGAGTTTGATTGTCGAGTACGGTCAGGTCAAGTCCAAATTAGGGAGCGAGT
TGACAGTCTATGCAGCCGAGTGTTGGGAGGATTTTTTCTCCCGGGTCAATAGAGCCATGCAGCTGATTCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

63.45

99.13

0.629
  comGB/cglB Streptococcus mitis NCTC 12261

60.896

97.101

0.591
  comGB/cglB Streptococcus mitis SK321

60.299

97.101

0.586
  comYB Streptococcus mutans UA140

59.238

98.841

0.586
  comYB Streptococcus mutans UA159

59.238

98.841

0.586
  comGB/cglB Streptococcus pneumoniae Rx1

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae D39

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae R6

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae TIGR4

60

97.101

0.583
  comGB Lactococcus lactis subsp. cremoris KW2

50.742

97.681

0.496