Detailed information NTG0714283

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NL419_RS05310
• Genome accession: NZ_CP116923
• Coordinates: 996392..997384 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MLI104K1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 991392..1002384

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NL419_RS05280 (NL419_005280)	ispD	991453..992163 (+)	711	WP_072667568.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NL419_RS05285 (NL419_005285)	ispF	992163..992642 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NL419_RS05290 (NL419_005290)	truD	992639..993688 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
NL419_RS05295 (NL419_005295)	surE	993669..994430 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
NL419_RS05300 (NL419_005300)	pcm	994424..995050 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
NL419_RS05305 (NL419_005305)	nlpD	995235..996329 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
NL419_RS05310 (NL419_005310)	rpoS	996392..997384 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
NL419_RS05315 (NL419_005315)	ygbN	997478..998842 (-)	1365	WP_000104441.1	GntP family transporter	-
NL419_RS05320 (NL419_005320)	ygbM	998931..999707 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
NL419_RS05325 (NL419_005325)	ygbL	999712..1000350 (-)	639	WP_001278994.1	aldolase	-
NL419_RS05330 (NL419_005330)	otnK	1000347..1001609 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=714283 NL419_RS05310 WP_000081550.1 996392..997384(+) (rpoS) [Escherichia coli strain MLI104K1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=714283 NL419_RS05310 WP_000081550.1 996392..997384(+) (rpoS) [Escherichia coli strain MLI104K1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715