Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NPA43_RS15915 Genome accession   NZ_CP101833
Coordinates   3104537..3104893 (-) Length   118 a.a.
NCBI ID   WP_249705624.1    Uniprot ID   -
Organism   Bacillus pumilus strain NDY-10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3099537..3109893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS15880 (NPA43_15880) fliW 3099673..3100107 (-) 435 WP_041088051.1 flagellar assembly protein FliW -
  NPA43_RS15885 (NPA43_15885) - 3100136..3100714 (-) 579 WP_249705607.1 DUF6470 family protein -
  NPA43_RS15890 (NPA43_15890) flgL 3100761..3101672 (-) 912 WP_099726387.1 flagellar hook-associated protein FlgL -
  NPA43_RS15895 (NPA43_15895) flgK 3101682..3103202 (-) 1521 WP_230030676.1 flagellar hook-associated protein FlgK -
  NPA43_RS15900 (NPA43_15900) - 3103218..3103700 (-) 483 WP_099726389.1 flagellar protein FlgN -
  NPA43_RS15905 (NPA43_15905) flgM 3103718..3103981 (-) 264 WP_249705608.1 flagellar biosynthesis anti-sigma factor FlgM -
  NPA43_RS15910 (NPA43_15910) - 3104061..3104480 (-) 420 WP_099726390.1 TIGR03826 family flagellar region protein -
  NPA43_RS15915 (NPA43_15915) comFC 3104537..3104893 (-) 357 WP_249705624.1 ComF family protein Machinery gene
  NPA43_RS15920 (NPA43_15920) - 3105056..3105223 (-) 168 Protein_3083 ComF family protein -
  NPA43_RS15925 (NPA43_15925) - 3105220..3105513 (-) 294 WP_099726391.1 late competence development ComFB family protein -
  NPA43_RS15930 (NPA43_15930) comFA 3105578..3106951 (-) 1374 WP_142353656.1 DEAD/DEAH box helicase Machinery gene
  NPA43_RS15935 (NPA43_15935) - 3107073..3107915 (-) 843 WP_099726393.1 DegV family protein -
  NPA43_RS15940 (NPA43_15940) degU 3108130..3108819 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 13212.65 Da        Isoelectric Point: 10.8233

>NTDB_id=712254 NPA43_RS15915 WP_249705624.1 3104537..3104893(-) (comFC) [Bacillus pumilus strain NDY-10]
MFKRSFSIKKPVLIPIPLSKERLKERGFNQSVVLASLIGMPILQPLVKIHQSKQSKKSKNERLDQKGLFQLKQSDAILQK
DIVLIDDIYTTGATIYDAAKILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 357 bp        

>NTDB_id=712254 NPA43_RS15915 WP_249705624.1 3104537..3104893(-) (comFC) [Bacillus pumilus strain NDY-10]
GTGTTTAAGCGTTCCTTTTCAATTAAAAAACCTGTGCTGATTCCAATCCCTTTAAGTAAAGAAAGGTTAAAGGAAAGAGG
ATTTAATCAGTCCGTCGTACTAGCTTCCTTGATTGGTATGCCTATATTGCAACCACTCGTTAAAATTCATCAAAGTAAGC
AGTCTAAGAAAAGTAAAAATGAACGTCTAGATCAAAAGGGATTGTTCCAATTAAAGCAGTCAGATGCGATCCTTCAAAAG
GATATTGTATTAATTGATGATATCTATACAACTGGGGCGACCATCTATGATGCGGCAAAAATTTTAAAAGACGCAGGTGC
CAAAAGTGTTTCCTCTTTTACGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(37-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

51.695

100

0.517
  comFC Lactococcus lactis subsp. cremoris KW2

46.789

92.373

0.432
  comFC/cflB Streptococcus mitis NCTC 12261

45.872

92.373

0.424
  comFC/cflB Streptococcus pneumoniae D39

44.037

92.373

0.407
  comFC/cflB Streptococcus pneumoniae R6

44.037

92.373

0.407
  comFC/cflB Streptococcus pneumoniae TIGR4

44.037

92.373

0.407
  comFC/cflB Streptococcus mitis SK321

44.037

92.373

0.407
  comFC/cflB Streptococcus pneumoniae Rx1

44.037

92.373

0.407