Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NPA43_RS15930 Genome accession   NZ_CP101833
Coordinates   3105578..3106951 (-) Length   457 a.a.
NCBI ID   WP_142353656.1    Uniprot ID   -
Organism   Bacillus pumilus strain NDY-10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3100578..3111951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS15890 (NPA43_15890) flgL 3100761..3101672 (-) 912 WP_099726387.1 flagellar hook-associated protein FlgL -
  NPA43_RS15895 (NPA43_15895) flgK 3101682..3103202 (-) 1521 WP_230030676.1 flagellar hook-associated protein FlgK -
  NPA43_RS15900 (NPA43_15900) - 3103218..3103700 (-) 483 WP_099726389.1 flagellar protein FlgN -
  NPA43_RS15905 (NPA43_15905) flgM 3103718..3103981 (-) 264 WP_249705608.1 flagellar biosynthesis anti-sigma factor FlgM -
  NPA43_RS15910 (NPA43_15910) - 3104061..3104480 (-) 420 WP_099726390.1 TIGR03826 family flagellar region protein -
  NPA43_RS15915 (NPA43_15915) comFC 3104537..3104893 (-) 357 WP_249705624.1 ComF family protein Machinery gene
  NPA43_RS15920 (NPA43_15920) - 3105056..3105223 (-) 168 Protein_3083 ComF family protein -
  NPA43_RS15925 (NPA43_15925) - 3105220..3105513 (-) 294 WP_099726391.1 late competence development ComFB family protein -
  NPA43_RS15930 (NPA43_15930) comFA 3105578..3106951 (-) 1374 WP_142353656.1 DEAD/DEAH box helicase Machinery gene
  NPA43_RS15935 (NPA43_15935) - 3107073..3107915 (-) 843 WP_099726393.1 DegV family protein -
  NPA43_RS15940 (NPA43_15940) degU 3108130..3108819 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NPA43_RS15945 (NPA43_15945) degS 3108884..3110059 (-) 1176 WP_099726394.1 sensor histidine kinase Regulator
  NPA43_RS15950 (NPA43_15950) - 3110281..3110949 (+) 669 WP_249705609.1 YigZ family protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 52175.85 Da        Isoelectric Point: 10.0837

>NTDB_id=712255 NPA43_RS15930 WP_142353656.1 3105578..3106951(-) (comFA) [Bacillus pumilus strain NDY-10]
MDKAMELRQQLQSRHLLTIETRCTKPHLDWLEEKGLVNRSPAIERKASGFTCCRCGVSNKRYFALSPCEICQKECVYCRS
CIMMGKVTECGSLYEWTGPQMKETFQSELTWQGELSKGQKRASEKMIEAIRNKSDLLVWAVCGAGKTEVLFHGIEYALNK
GMSVCIATPRTDVVLELEPRIRKAFQGLNIAVLYGGSPQRFQIAPLMIATTHQLMRYKNAFDVLIVDEVDAFPFSIDERL
QFAVLKAMRNTGVRIYLSATPSKKMKKDVVHGQLEAIKIPLRFHGRPLPVPSFQWIGHWKKKLNKNQLPSAVMNWLEKHI
KRKRRVLLFVPSISAMKKVTKILREHHVNVEGVSADDQDRKQKVQHFRDYAYDVLVTTTILERGVTIQNVQVGVLGAEST
IFTESALVQISGRAGRHPEYSTGDVFFFHFGLTRRMKQAKKHIVKMNDTAAQEFSEK

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=712255 NPA43_RS15930 WP_142353656.1 3105578..3106951(-) (comFA) [Bacillus pumilus strain NDY-10]
ATGGACAAAGCGATGGAACTAAGGCAACAACTGCAATCACGCCACCTACTTACCATTGAAACTCGATGCACAAAGCCTCA
TTTGGATTGGCTGGAGGAGAAAGGGTTAGTAAATAGATCTCCTGCCATTGAGAGGAAAGCGAGCGGTTTTACATGCTGCC
GATGTGGTGTATCAAACAAGCGGTACTTTGCTCTCTCACCTTGTGAAATATGCCAAAAAGAATGTGTGTACTGTAGATCA
TGCATCATGATGGGAAAAGTAACCGAATGTGGCTCTCTGTACGAATGGACGGGTCCGCAAATGAAAGAAACGTTTCAATC
TGAATTAACATGGCAGGGAGAGCTGTCTAAAGGGCAAAAGAGAGCGTCAGAAAAAATGATAGAAGCGATAAGAAACAAAT
CTGATCTACTAGTTTGGGCTGTTTGCGGGGCAGGGAAAACGGAGGTGCTTTTTCACGGAATTGAATATGCGTTAAATAAA
GGAATGAGTGTCTGTATCGCGACGCCTAGAACAGATGTAGTGCTTGAACTCGAGCCGCGAATTAGAAAGGCATTTCAAGG
GCTGAATATAGCTGTGCTTTATGGCGGGAGTCCTCAAAGGTTCCAAATAGCACCGCTTATGATCGCCACAACCCATCAGC
TCATGAGATACAAAAATGCTTTTGATGTTCTCATTGTAGATGAGGTCGATGCCTTTCCTTTTTCAATCGATGAACGTCTT
CAATTTGCTGTTTTAAAGGCTATGAGAAACACAGGGGTTAGGATTTACTTAAGTGCCACACCATCTAAAAAAATGAAAAA
GGATGTTGTTCATGGACAATTAGAAGCGATAAAAATTCCTCTGCGTTTCCACGGGCGACCTTTACCCGTCCCGTCATTTC
AATGGATTGGACATTGGAAAAAGAAATTAAACAAGAATCAGCTGCCATCTGCTGTAATGAACTGGCTTGAGAAACATATT
AAAAGAAAGAGAAGGGTTTTACTTTTTGTTCCTTCTATTTCCGCGATGAAGAAGGTAACGAAGATTCTTCGAGAGCATCA
TGTAAATGTAGAGGGTGTATCTGCTGATGATCAAGATAGGAAACAAAAGGTCCAACACTTCAGAGATTACGCATACGATG
TACTGGTTACTACAACTATTCTCGAAAGAGGCGTAACCATTCAAAATGTTCAGGTGGGTGTACTAGGTGCGGAATCTACT
ATTTTCACAGAAAGTGCACTTGTTCAAATTTCTGGAAGGGCGGGGAGGCATCCTGAATATTCTACAGGAGATGTTTTCTT
TTTTCATTTTGGTTTAACGAGAAGGATGAAACAAGCGAAGAAGCATATTGTAAAAATGAATGATACAGCTGCACAGGAGT
TTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(114-262)

Helicase conserved C-terminal domain (Helicase_C)

(311-417)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

53.468

97.812

0.523