Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NPA43_RS15940 Genome accession   NZ_CP101833
Coordinates   3108130..3108819 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain NDY-10     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3103130..3113819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA43_RS15900 (NPA43_15900) - 3103218..3103700 (-) 483 WP_099726389.1 flagellar protein FlgN -
  NPA43_RS15905 (NPA43_15905) flgM 3103718..3103981 (-) 264 WP_249705608.1 flagellar biosynthesis anti-sigma factor FlgM -
  NPA43_RS15910 (NPA43_15910) - 3104061..3104480 (-) 420 WP_099726390.1 TIGR03826 family flagellar region protein -
  NPA43_RS15915 (NPA43_15915) comFC 3104537..3104893 (-) 357 WP_249705624.1 ComF family protein Machinery gene
  NPA43_RS15920 (NPA43_15920) - 3105056..3105223 (-) 168 Protein_3083 ComF family protein -
  NPA43_RS15925 (NPA43_15925) - 3105220..3105513 (-) 294 WP_099726391.1 late competence development ComFB family protein -
  NPA43_RS15930 (NPA43_15930) comFA 3105578..3106951 (-) 1374 WP_142353656.1 DEAD/DEAH box helicase Machinery gene
  NPA43_RS15935 (NPA43_15935) - 3107073..3107915 (-) 843 WP_099726393.1 DegV family protein -
  NPA43_RS15940 (NPA43_15940) degU 3108130..3108819 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NPA43_RS15945 (NPA43_15945) degS 3108884..3110059 (-) 1176 WP_099726394.1 sensor histidine kinase Regulator
  NPA43_RS15950 (NPA43_15950) - 3110281..3110949 (+) 669 WP_249705609.1 YigZ family protein -
  NPA43_RS15955 (NPA43_15955) - 3110934..3112031 (+) 1098 WP_099726396.1 LCP family protein -
  NPA43_RS15960 (NPA43_15960) - 3112067..3113134 (-) 1068 WP_099726397.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=712256 NPA43_RS15940 WP_008348273.1 3108130..3108819(-) (degU) [Bacillus pumilus strain NDY-10]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=712256 NPA43_RS15940 WP_008348273.1 3108130..3108819(-) (degU) [Bacillus pumilus strain NDY-10]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAGCACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTGAAAACAGGGGCGAGAGGTTACCTGTTAAAAGA
AATGGATGCAGACACTCTCATTGAAGCAGTGAAAGTAGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAGTTCCGACGCCTAGCAACTAGCGGCGTTTCAGCACATCCACAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATTGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCATGTAAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996