Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NPA28_RS09355 Genome accession   NZ_CP101718
Coordinates   1831164..1832414 (+) Length   416 a.a.
NCBI ID   WP_044155839.1    Uniprot ID   -
Organism   Bacillus halotolerans strain S-5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1826164..1837414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPA28_RS09325 (NPA28_09325) yfmH 1826250..1827536 (+) 1287 WP_256766916.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  NPA28_RS09330 (NPA28_09330) ymfI 1827589..1828317 (+) 729 WP_024121450.1 elongation factor P 5-aminopentanone reductase -
  NPA28_RS09335 (NPA28_09335) - 1828397..1828654 (+) 258 WP_044155842.1 DUF3243 domain-containing protein -
  NPA28_RS09340 (NPA28_09340) - 1828784..1829575 (+) 792 WP_024121452.1 YmfK family protein -
  NPA28_RS09345 (NPA28_09345) - 1829642..1830514 (+) 873 WP_256766975.1 RodZ family helix-turn-helix domain-containing protein -
  NPA28_RS09350 (NPA28_09350) pgsA 1830564..1831145 (+) 582 WP_010334305.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NPA28_RS09355 (NPA28_09355) cinA 1831164..1832414 (+) 1251 WP_044155839.1 competence/damage-inducible protein A Machinery gene
  NPA28_RS09360 (NPA28_09360) recA 1832587..1833633 (+) 1047 WP_010334307.1 recombinase RecA Machinery gene
  NPA28_RS09365 (NPA28_09365) - 1833812..1834990 (+) 1179 WP_256766917.1 serine hydrolase -
  NPA28_RS09370 (NPA28_09370) rny 1835277..1836839 (+) 1563 WP_010334309.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45428.67 Da        Isoelectric Point: 5.0594

>NTDB_id=711754 NPA28_RS09355 WP_044155839.1 1831164..1832414(+) (cinA) [Bacillus halotolerans strain S-5]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIVFSGGLGPTKDDL
TKETIANVLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHDSRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITLSAAESFTGGLFSEWLTDLSGASALFSGGVVCYSNEVKQNVLG
VKKETLDRFGAVSEECASELAKGVQQLTGSDIGISFTGVAGPDTQEGHAPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=711754 NPA28_RS09355 WP_044155839.1 1831164..1832414(+) (cinA) [Bacillus halotolerans strain S-5]
ATGGAATTTCCAAAAAAAGCAGAGATTATTGCAGTCGGTTCAGAGCTCTTACTTGGTCAGATTGCTAATACAAATGCTCA
ATTTATCAGCAAACAGCTGGCAGAAATCGGAGTAAACGTATTTTACCATACAGCAGTCGGTGATAATCCGGAGCGGCTGA
AGCAGGTCATCCGTATTGCTGAAGAGCGCTCTGATTTTATTGTTTTTTCAGGAGGGCTCGGACCGACAAAAGATGATTTA
ACAAAAGAAACGATAGCAAATGTGCTGGGACGCCCGCTCGTTTTAAATGATGAGGCGTTTCAATCCATTGAGGATTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTCATCGAAGGATCTGACGTACTGGCGAATC
ACTTTGGAATGGCGCCGGGAATGCTTACAGAGCATGATTCGCGCTTTTATATGCTTCTTCCCGGGCCGCCGAGCGAATTG
CGTCCGATGTTTGAAAATGAGGCAAAACCGCTTCTTCTTAAAAAGATGGGCTCCAATGAAAAAATTGTATCAACTGTTCT
TCGCTTTTTCGGTATCGGCGAGTCTCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCACAGACGAACCCGACGATCG
CTCCGTTGGCAGCGGACGGAGAGGTGACGCTTCGCCTGACAGCAAAACATGCCGATGAAAAAGAAACAGAGCGTTTGTTA
AAAGAAACAGAAGCCGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGCTACGACGATACATCGCTTGTGAAAGAGCT
ATCTAAAGCATGTAAGGAAAAAGGCATCACGCTTTCTGCCGCAGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CAGACCTTAGCGGCGCTTCAGCATTGTTTTCCGGCGGCGTTGTTTGCTATTCAAACGAAGTGAAGCAAAATGTGCTCGGC
GTCAAAAAGGAAACATTGGACCGTTTCGGAGCAGTCAGCGAGGAATGCGCATCTGAGCTCGCAAAGGGTGTTCAGCAGCT
CACTGGAAGCGATATTGGCATTAGCTTTACCGGTGTTGCCGGCCCTGATACTCAAGAAGGCCATGCACCTGGACATGTAT
TTATCGGTATTTCTGCAAACGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCAGGCTCCAGAACAGGAATCAGAAAACGT
GCTGCTAAATATGGCTGCCATTTAATTTTAAAACTGTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

96.154

100

0.962
  cinA Streptococcus mutans UA159

47.215

99.279

0.469
  cinA Streptococcus mitis SK321

46.411

100

0.466
  cinA Streptococcus mitis NCTC 12261

46.411

100

0.466
  cinA Streptococcus pneumoniae TIGR4

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

45.933

100

0.462
  cinA Streptococcus pneumoniae R6

45.933

100

0.462
  cinA Streptococcus pneumoniae D39

45.694

100

0.459
  cinA Streptococcus suis isolate S10

41.432

93.99

0.389