Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   PFZ59_RS11290 Genome accession   NZ_CP116393
Coordinates   2217636..2218298 (-) Length   220 a.a.
NCBI ID   WP_208582318.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2212636..2223298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS11275 (PFZ59_11275) sodA 2213570..2214175 (-) 606 WP_044768724.1 superoxide dismutase SodA -
  PFZ59_RS11280 (PFZ59_11280) holA 2214288..2215319 (-) 1032 WP_277697114.1 DNA polymerase III subunit delta -
  PFZ59_RS11285 (PFZ59_11285) comEC/celB 2215415..2217652 (-) 2238 WP_277697115.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PFZ59_RS11290 (PFZ59_11290) comEA/celA/cilE 2217636..2218298 (-) 663 WP_208582318.1 helix-hairpin-helix domain-containing protein Machinery gene
  PFZ59_RS11295 (PFZ59_11295) - 2218365..2219111 (-) 747 WP_024385479.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  PFZ59_RS11300 (PFZ59_11300) - 2219258..2220703 (+) 1446 WP_277697116.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  PFZ59_RS11305 (PFZ59_11305) - 2220973..2222175 (-) 1203 WP_347176381.1 IS110 family transposase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23506.25 Da        Isoelectric Point: 4.1296

>NTDB_id=709899 PFZ59_RS11290 WP_208582318.1 2217636..2218298(-) (comEA/celA/cilE) [Streptococcus suis strain SS/UPM/MY/F001]
MDTIKTYIEMLKEYKWQIALPAVAGLLLTTFLIFSQPAKSDQTGLTDFPQTEQTSSSSDLVEETSTEVSKEPSLLVVDVK
GAVVKPGLYTLEADARVNDAVEAAGGLTSQADPKSINLAQKLSDEAVVYVGSKDENISVVANTTTSSAMSQEEKNTSLVN
LNTATEADLQTISGIGAKRATDIITYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVE

Nucleotide


Download         Length: 663 bp        

>NTDB_id=709899 PFZ59_RS11290 WP_208582318.1 2217636..2218298(-) (comEA/celA/cilE) [Streptococcus suis strain SS/UPM/MY/F001]
ATGGATACGATTAAAACTTATATTGAAATGCTTAAAGAATACAAGTGGCAGATTGCTCTGCCAGCAGTTGCAGGTTTGCT
TCTGACAACATTCTTAATTTTCAGCCAACCTGCCAAGTCTGATCAGACAGGCCTGACAGATTTTCCGCAGACCGAACAAA
CTTCTAGCAGCTCTGACTTGGTCGAGGAAACCAGTACAGAAGTAAGTAAGGAGCCCAGCCTGCTGGTCGTTGATGTCAAA
GGAGCGGTAGTAAAACCAGGACTCTACACTTTAGAAGCTGATGCGCGTGTTAATGATGCAGTTGAAGCAGCTGGCGGCTT
GACCAGTCAGGCAGACCCCAAGTCTATCAATCTGGCTCAAAAGCTCAGCGACGAAGCGGTGGTCTATGTGGGCAGCAAGG
ATGAAAACATCTCTGTAGTGGCCAATACGACTACCAGCTCTGCTATGTCCCAAGAAGAAAAAAACACCAGTCTAGTCAAT
CTAAATACGGCGACTGAGGCGGACTTGCAGACCATTTCTGGTATTGGTGCCAAGCGAGCGACGGACATTATCACCTATCG
TGAGGCCAACGGTGGCTTCAAGTCGGTGGATGACCTCAACAATGTGTCGGGCATCGGCGACAAGACTATGGAAAGCATCC
GGCCTTATGTCACGGTTGAGTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(76-129)

Helix-hairpin-helix motif (HHH_3)

(155-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.982

100

0.486
  comEA/celA/cilE Streptococcus pneumoniae D39

47.982

100

0.486
  comEA/celA/cilE Streptococcus pneumoniae R6

47.982

100

0.486
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.982

100

0.486
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

47.534

100

0.482
  comEA/celA/cilE Streptococcus mitis SK321

46.847

100

0.473
  comEA Streptococcus thermophilus LMD-9

59.477

69.545

0.414
  comEA Lactococcus lactis subsp. cremoris KW2

40.092

98.636

0.395