Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   L4174_RS16280 Genome accession   NZ_CP100425
Coordinates   3531557..3532651 (-) Length   364 a.a.
NCBI ID   WP_248144763.1    Uniprot ID   -
Organism   Photobacterium sp. CCB-ST2H9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3526557..3537651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4174_RS16250 (L4174_016250) hemF 3527134..3528036 (-) 903 WP_248144768.1 oxygen-dependent coproporphyrinogen oxidase -
  L4174_RS16255 (L4174_016255) tsaC 3528044..3528601 (-) 558 WP_248144767.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  L4174_RS16260 (L4174_016260) purE 3528799..3529287 (+) 489 WP_248144766.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  L4174_RS16265 (L4174_016265) - 3529290..3530411 (+) 1122 WP_248144765.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  L4174_RS16270 (L4174_016270) - 3530458..3531048 (-) 591 WP_248144764.1 type I DNA topoisomerase -
  L4174_RS16275 (L4174_016275) - 3531081..3531554 (-) 474 WP_036752600.1 DUF494 family protein -
  L4174_RS16280 (L4174_016280) dprA 3531557..3532651 (-) 1095 WP_248144763.1 DNA-processing protein DprA Machinery gene
  L4174_RS16285 (L4174_016285) - 3532653..3533336 (-) 684 WP_248144762.1 hypothetical protein -
  L4174_RS16290 (L4174_016290) def 3533608..3534117 (+) 510 WP_248144761.1 peptide deformylase -
  L4174_RS16295 (L4174_016295) fmt 3534133..3535077 (+) 945 WP_248144760.1 methionyl-tRNA formyltransferase -
  L4174_RS16300 (L4174_016300) rsmB 3535213..3536511 (+) 1299 WP_248144759.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 38974.67 Da        Isoelectric Point: 6.7744

>NTDB_id=705131 L4174_RS16280 WP_248144763.1 3531557..3532651(-) (dprA) [Photobacterium sp. CCB-ST2H9]
MSHLEDWLALAAVPGLGGQRIERLLQHGHVSELRTMPEQALLSLGLKASQIALLRHPKPERLSEALRWCEQENQHLLVLT
DPAYPGLLKEISSPPPVLFIRGDPRWLSEPQLAIVGSRSASLDGREAARDFAAAMVAADYVVTSGLALGVDGHAHHSALK
NGGATVAVLGSGLGRIYPAGHRELAAQIAEQGALVSEFWPSEPPRPQHFPRRNRIISGLSVGVLVVEAALKSGSLITARY
ALEQNRDVFALPGSIYAPGSKGCNALIKSGAKLVESPVDIFEEVGILTRCAKSSQLSVSLPHPENEQLPFNAVLANVGNE
ATPVDVVAERCAQPVHEVMTQLLELELQGVVTSVPGGYIRTRRG

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=705131 L4174_RS16280 WP_248144763.1 3531557..3532651(-) (dprA) [Photobacterium sp. CCB-ST2H9]
ATGAGCCATCTCGAAGATTGGTTGGCCTTAGCTGCTGTCCCCGGTCTGGGCGGACAGCGTATCGAGAGGCTGTTACAGCA
CGGCCATGTGTCTGAACTACGGACCATGCCGGAGCAGGCACTGTTGTCTCTGGGGCTGAAAGCATCGCAGATAGCTCTGC
TTAGACATCCGAAGCCAGAGCGCCTCAGTGAAGCCTTGCGCTGGTGTGAGCAGGAGAATCAGCATCTGCTGGTGCTGACA
GATCCGGCTTACCCCGGATTGTTGAAAGAAATCAGCTCTCCGCCCCCGGTTTTATTTATCCGGGGCGATCCCCGCTGGCT
CAGTGAACCCCAGTTGGCGATCGTGGGCAGCCGCTCTGCCAGTCTGGACGGCCGGGAAGCCGCGCGGGATTTTGCCGCGG
CCATGGTTGCAGCTGATTATGTGGTGACCAGCGGTCTGGCTCTGGGTGTTGATGGACATGCCCACCACAGTGCCCTGAAA
AACGGCGGGGCTACGGTGGCTGTGTTGGGCTCAGGTCTTGGGCGGATTTACCCTGCCGGGCACCGGGAACTGGCGGCACA
AATTGCAGAACAGGGGGCGCTGGTGTCAGAGTTCTGGCCGTCCGAGCCACCGCGACCGCAACATTTTCCACGACGTAATC
GAATCATCAGCGGGTTGTCTGTGGGCGTGCTGGTGGTGGAGGCCGCGCTGAAGAGCGGTTCGCTGATCACGGCTCGCTAT
GCGCTGGAGCAGAATCGCGATGTTTTTGCTCTGCCCGGGTCGATTTATGCACCCGGAAGCAAAGGTTGTAACGCCTTGAT
AAAATCCGGTGCTAAACTGGTGGAAAGTCCGGTCGATATCTTTGAGGAGGTGGGGATACTCACCCGCTGTGCAAAAAGTA
GTCAATTGAGCGTATCGCTGCCACATCCTGAAAATGAGCAATTGCCATTTAATGCGGTGTTGGCTAACGTAGGCAATGAA
GCAACACCCGTAGATGTGGTTGCTGAACGCTGTGCACAACCAGTTCATGAGGTCATGACGCAACTGCTGGAGTTAGAGTT
GCAAGGGGTTGTCACTTCAGTGCCCGGTGGCTATATCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-275)

DprA winged helix domain (DprA_WH)

(311-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

52.762

99.451

0.525
  dprA Vibrio cholerae strain A1552

51.081

100

0.519
  dprA Glaesserella parasuis strain SC1401

47.34

100

0.489
  dprA Legionella pneumophila strain ERS1305867

43.407

100

0.434
  dprA Neisseria meningitidis strain C311

39.433

100

0.42
  dprA Neisseria meningitidis MC58

39.433

100

0.42
  dprA Haemophilus influenzae Rd KW20

50.719

76.374

0.387
  dprA Acinetobacter baumannii strain A118

40

90.659

0.363
  dprA Neisseria gonorrhoeae strain FA1090

41.379

87.637

0.363