Detailed information NTG0070397

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: VCA1004_RS05515
• Genome accession: NZ_AP018689
• Coordinates: 1208096..1209520 (-)
• Length: 474 a.a.
• NCBI ID: WP_086984393.1
• Uniprot ID: -
• Organism: Vibrio aphrogenes strain CA-1004
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1203096..1214520

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VCA1004_RS05485	ihfA	1203271..1203567 (+)	297	WP_086984398.1	integration host factor subunit alpha	-
VCA1004_RS05490	-	1203655..1204299 (+)	645	WP_086984669.1	thiopurine S-methyltransferase	-
VCA1004_RS05495	purT	1204408..1205583 (-)	1176	WP_086984397.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
VCA1004_RS05500	cdd	1205774..1206664 (-)	891	WP_086984396.1	cytidine deaminase	-
VCA1004_RS05505	-	1206982..1207668 (-)	687	WP_086984395.1	CidB/LrgB family autolysis modulator	-
VCA1004_RS05510	-	1207669..1208001 (-)	333	WP_164520863.1	CidA/LrgA family protein	-
VCA1004_RS05515	sbcB	1208096..1209520 (-)	1425	WP_086984393.1	exodeoxyribonuclease I	Machinery gene
VCA1004_RS05520	-	1209782..1210228 (-)	447	WP_086984392.1	TerB family tellurite resistance protein	-
VCA1004_RS05525	-	1210427..1211149 (+)	723	WP_408646886.1	sulfite exporter TauE/SafE family protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54812.32 Da
• Isoelectric Point: 4.9999

>NTDB_id=70397 VCA1004_RS05515 WP_086984393.1 1208096..1209520(-) (sbcB) [Vibrio aphrogenes strain CA-1004]
MSHDHSPSFFFFDYETWGVSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGIKPQKTQQEGLPEP
EFIRRIHDELSMPNTISLGYNSIRFDDEVTRYTLYRNFFDPYAWSWQNGNSRWDLLDIMRTCYALRPEGINWPENEEGFP
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKLKQAQPKLFNYLLSMRHKRKLNELIDIVNMTPLVHVSGMFGVQCSN
ISWIVPMAWHPTNNNAVITVNLAMDPTPLIELDAETLHQRLYTKRDDLAPDELPVPLKLMHINKCPVLAPAKTLTAENAE
RIGIDRQQCLANLAILKSHPEIREKLIAIYHIEREFAQDNNVDTQLYQGFFSPADKATIDIIRETDPEKLAGLELSVSDP
RIEPLLFRYRARNFPWTLNESERLKWQAHCRDYYETHLEDYMLNLENLVYEHENDAAKMEILKSVYQYVESLMS

Nucleotide

• Length: 1425 bp

>NTDB_id=70397 VCA1004_RS05515 WP_086984393.1 1208096..1209520(-) (sbcB) [Vibrio aphrogenes strain CA-1004]
ATGAGTCATGACCACTCCCCAAGCTTTTTCTTTTTCGACTACGAAACCTGGGGGGTAAGTCCAGCGAAAGATCGACCTAG
CCAGTTTGCTGGGGTTCGTACCGATATGGATTTCAATATTATCGGTGAGCCATTAGTGATTTATTGCCAACCACCGAGTG
ATTACCTGCCTTCTCCTGAAGCAGCATTAATTACGGGTATCAAACCGCAAAAAACCCAACAAGAAGGCTTACCTGAACCT
GAGTTCATTCGTCGTATTCATGATGAATTGTCTATGCCTAATACGATTTCTTTAGGCTATAACAGCATACGATTTGATGA
CGAAGTAACTCGATATACGCTATATCGTAATTTTTTCGATCCTTACGCTTGGTCTTGGCAAAATGGCAATTCACGCTGGG
ATCTTCTTGATATTATGCGTACTTGCTACGCCCTGCGCCCTGAAGGCATTAACTGGCCTGAAAACGAAGAAGGTTTCCCA
AGTTTTAAATTGGAACACCTTTCTGTTGCCAATGGCATTGAACACAGTAATGCCCATGATGCGATGGCCGACGTCATTGC
TACCATAGAGCTGGCGAAAAAGCTCAAACAAGCACAACCTAAGTTATTTAATTATCTATTGAGTATGCGTCATAAGCGCA
AACTCAACGAACTTATTGATATTGTTAACATGACACCACTGGTTCATGTTTCCGGTATGTTTGGCGTGCAGTGTTCGAAT
ATCAGTTGGATTGTGCCGATGGCTTGGCATCCCACCAATAATAATGCCGTCATCACCGTCAATCTAGCCATGGATCCGAC
GCCATTAATCGAGCTTGATGCGGAAACCTTACATCAACGCCTCTATACTAAACGTGATGATTTAGCCCCAGACGAATTAC
CAGTACCGCTCAAGTTAATGCACATTAATAAATGCCCCGTGCTGGCTCCTGCGAAAACCCTGACCGCAGAGAATGCTGAA
CGTATTGGTATTGATCGACAACAATGTTTAGCCAATCTCGCTATCTTAAAATCACACCCAGAGATCCGAGAAAAGCTGAT
CGCCATTTACCATATTGAGCGTGAATTTGCTCAAGATAACAATGTTGATACGCAACTTTATCAAGGCTTTTTCTCTCCTG
CAGATAAAGCCACTATTGATATCATTCGAGAAACCGATCCTGAAAAGCTAGCCGGTTTAGAATTATCCGTCAGCGATCCT
CGTATCGAGCCTTTACTATTCCGATACCGTGCGAGAAACTTCCCATGGACATTAAACGAGTCAGAACGCCTGAAATGGCA
AGCGCATTGCCGTGACTATTATGAAACTCACCTAGAAGATTACATGCTTAACCTTGAAAACTTGGTTTATGAGCATGAAA
ATGATGCGGCTAAAATGGAGATTTTAAAATCCGTTTATCAATATGTTGAGTCGTTAATGTCTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	74.576	99.578	0.743