Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   VCA1004_RS04245 Genome accession   NZ_AP018689
Coordinates   917108..917410 (+) Length   100 a.a.
NCBI ID   WP_086982861.1    Uniprot ID   -
Organism   Vibrio aphrogenes strain CA-1004     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 912108..922410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCA1004_RS04235 - 914458..914730 (+) 273 WP_086982857.1 HU family DNA-binding protein -
  VCA1004_RS04240 ppiD 914934..916793 (+) 1860 WP_086982858.1 peptidylprolyl isomerase -
  VCA1004_RS04245 comEA 917108..917410 (+) 303 WP_086982861.1 ComEA family DNA-binding protein Machinery gene
  VCA1004_RS04250 rrtA 917506..918066 (-) 561 WP_086982864.1 rhombosortase -
  VCA1004_RS04255 - 918065..918679 (+) 615 WP_086982866.1 tRNA-uridine aminocarboxypropyltransferase -
  VCA1004_RS04260 - 918738..920105 (-) 1368 WP_086982868.1 anti-phage deoxyguanosine triphosphatase -
  VCA1004_RS04265 - 920261..921055 (+) 795 WP_086982870.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11190.05 Da        Isoelectric Point: 10.0990

>NTDB_id=70393 VCA1004_RS04245 WP_086982861.1 917108..917410(+) (comEA) [Vibrio aphrogenes strain CA-1004]
MRKIYSFLLLMMMFTLPTSIVNAAETKSTKQHEGIEVTVNINTADAKEIATLLQGVGEKKAQDIVDYRNQHGKFKDVDAL
KQVKGIGQATIDKNKNRILL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=70393 VCA1004_RS04245 WP_086982861.1 917108..917410(+) (comEA) [Vibrio aphrogenes strain CA-1004]
ATGCGTAAAATATATTCATTTTTATTATTGATGATGATGTTCACATTACCGACGAGTATAGTGAATGCGGCTGAAACAAA
ATCGACTAAGCAGCATGAAGGCATAGAGGTCACCGTGAATATTAATACGGCTGATGCCAAGGAAATTGCAACTTTATTAC
AAGGTGTTGGTGAGAAAAAAGCGCAAGATATTGTCGATTATCGTAACCAACATGGTAAATTTAAGGATGTCGATGCGCTT
AAACAAGTGAAAGGGATTGGTCAGGCCACCATAGATAAAAATAAAAATCGTATTCTTCTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(36-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

60.638

94

0.57
  comEA Vibrio campbellii strain DS40M4

57.895

95

0.55
  comEA Vibrio cholerae strain A1552

54.545

99

0.54
  comEA Vibrio cholerae C6706

54.545

99

0.54
  comEA/comE1 Glaesserella parasuis strain SC1401

41.379

100

0.48
  comEA Acinetobacter baylyi ADP1

50.588

85

0.43
  comE1/comEA Haemophilus influenzae Rd KW20

36.522

100

0.42

Multiple sequence alignment