Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VRUMOI_RS12420 Genome accession   NZ_AP018685
Coordinates   2725689..2726840 (-) Length   383 a.a.
NCBI ID   WP_089137982.1    Uniprot ID   -
Organism   Vibrio rumoiensis strain FERM P-14531     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2720689..2731840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRUMOI_RS12390 hemF 2720933..2721850 (-) 918 WP_089137977.1 oxygen-dependent coproporphyrinogen oxidase -
  VRUMOI_RS12395 - 2721858..2722415 (-) 558 WP_089137978.1 Sua5/YciO/YrdC/YwlC family protein -
  VRUMOI_RS12400 purE 2722885..2723370 (+) 486 WP_089125143.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VRUMOI_RS12405 - 2723376..2724512 (+) 1137 WP_089137979.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VRUMOI_RS12410 - 2724589..2725179 (-) 591 WP_089137980.1 type I DNA topoisomerase -
  VRUMOI_RS12415 - 2725194..2725664 (-) 471 WP_089137981.1 DUF494 family protein -
  VRUMOI_RS12420 dprA 2725689..2726840 (-) 1152 WP_089137982.1 DNA-processing protein DprA Machinery gene
  VRUMOI_RS12425 - 2726889..2728040 (-) 1152 WP_089137983.1 LysM peptidoglycan-binding domain-containing protein -
  VRUMOI_RS12430 def 2728171..2728683 (+) 513 WP_231897463.1 peptide deformylase -
  VRUMOI_RS12435 fmt 2728710..2729705 (+) 996 WP_089137985.1 methionyl-tRNA formyltransferase -
  VRUMOI_RS12440 rsmB 2729824..2731104 (+) 1281 WP_089137986.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41811.68 Da        Isoelectric Point: 6.9465

>NTDB_id=70378 VRUMOI_RS12420 WP_089137982.1 2725689..2726840(-) (dprA) [Vibrio rumoiensis strain FERM P-14531]
MNDAQLAAWLTLSFTPRLGGVALARLMSVDSPENLVQYSPLQWQKLGLKSAQIQYIQQEAAPEVERCLHWLQHSPSHHIL
TPLDESYPHLLSQMSSHPPVLFVKGELAAVNSAQFAMVGSRHASLDGLRASKEFAYQLAQHGLTITSGLALGVDGHAHDG
ALMAHGKTVAVLGSGVDQIYPSRHKGLAERILQQDGALVSELRPDAKPRAENFPRRNRIISGLSQGVLVVEAAERSGSLI
TARYALEQNRDVFALPGSIYQPGFSGTNQLLKQGAILALSPQDILDELNPVLSRSSYVYQPVQTQLNLTQQTTPEITVNH
SQPLPFPQLLANVGNEPTPVDILSQRTHIPIHEVMMQILELELAGHVISVPGGYILNNKNKSR

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=70378 VRUMOI_RS12420 WP_089137982.1 2725689..2726840(-) (dprA) [Vibrio rumoiensis strain FERM P-14531]
ATGAATGATGCTCAATTGGCGGCTTGGTTAACCCTGAGCTTTACGCCAAGACTTGGAGGTGTGGCACTGGCGCGTTTGAT
GAGTGTCGATTCACCAGAAAATTTGGTTCAATATTCACCGCTGCAATGGCAAAAACTTGGCCTAAAATCGGCTCAAATCC
AATATATACAGCAAGAGGCTGCGCCAGAGGTTGAGCGATGTTTACACTGGCTGCAGCACTCGCCATCCCACCATATATTA
ACGCCCTTAGATGAAAGTTACCCTCATCTATTAAGCCAAATGTCGTCTCACCCTCCGGTGTTGTTTGTAAAAGGTGAGCT
AGCTGCGGTGAACTCTGCACAATTTGCGATGGTCGGTAGCCGTCACGCCAGTTTAGATGGTTTAAGGGCATCAAAGGAGT
TTGCCTATCAACTGGCTCAACATGGGCTAACCATTACTAGTGGTTTAGCGTTAGGGGTGGATGGTCATGCACATGATGGT
GCTTTAATGGCGCATGGGAAGACGGTGGCGGTGTTAGGCTCTGGTGTTGATCAGATCTACCCTTCTCGACATAAAGGCTT
GGCAGAACGGATTTTACAGCAAGACGGGGCGTTGGTTTCTGAGCTTCGACCGGATGCGAAACCTCGCGCGGAAAACTTTC
CTCGTCGCAATCGAATTATTAGTGGTTTATCGCAAGGTGTGTTGGTTGTAGAGGCTGCAGAGCGTAGTGGTTCGTTGATT
ACCGCCCGTTATGCATTGGAACAAAACCGAGATGTGTTTGCTTTGCCGGGTTCGATTTATCAGCCTGGTTTTTCTGGGAC
TAACCAGTTATTAAAGCAAGGGGCAATTTTAGCATTGAGCCCACAAGATATTCTGGATGAATTAAATCCGGTACTCTCCC
GGTCTTCTTATGTATATCAACCGGTACAAACTCAGCTAAACTTAACACAACAGACGACACCAGAAATAACAGTTAATCAC
TCCCAACCATTGCCATTTCCCCAACTGTTAGCTAACGTAGGAAATGAACCTACACCAGTTGATATTTTGTCTCAGCGTAC
CCATATACCGATACACGAAGTAATGATGCAAATATTAGAGCTTGAGTTAGCTGGACATGTTATTTCTGTTCCTGGAGGTT
ATATTCTTAATAATAAGAATAAATCAAGATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(328-373)

DNA recombination-mediator protein A (DNA_processg_A)

(77-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

59.893

97.65

0.585
  dprA Vibrio cholerae strain A1552

53.158

99.217

0.527
  dprA Glaesserella parasuis strain SC1401

42.4

97.911

0.415
  dprA Legionella pneumophila strain ERS1305867

41.755

98.172

0.41
  dprA Haemophilus influenzae Rd KW20

43.539

92.95

0.405
  dprA Neisseria meningitidis strain C311

37.975

100

0.392
  dprA Neisseria meningitidis MC58

37.975

100

0.392
  dprA Neisseria gonorrhoeae MS11

36.154

100

0.368
  dprA Neisseria gonorrhoeae strain FA1090

36.154

100

0.368

Multiple sequence alignment