Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NHN23_RS06555 Genome accession   NZ_CP099990
Coordinates   1341536..1341862 (+) Length   108 a.a.
NCBI ID   WP_253345714.1    Uniprot ID   -
Organism   Staphylococcus equorum strain PU1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1336536..1346862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHN23_RS06525 - 1336683..1336883 (+) 201 WP_002512453.1 YqgQ family protein -
  NHN23_RS06530 - 1337473..1338459 (+) 987 WP_021339255.1 glucokinase -
  NHN23_RS06535 - 1338459..1338782 (+) 324 WP_021339254.1 MTH1187 family thiamine-binding protein -
  NHN23_RS06540 - 1338784..1339407 (+) 624 WP_002507502.1 MBL fold metallo-hydrolase -
  NHN23_RS06545 comGA 1339507..1340481 (+) 975 WP_021339253.1 competence type IV pilus ATPase ComGA Machinery gene
  NHN23_RS06550 comGB 1340453..1341520 (+) 1068 WP_021339252.1 competence type IV pilus assembly protein ComGB -
  NHN23_RS06555 comGC 1341536..1341862 (+) 327 WP_253345714.1 competence type IV pilus major pilin ComGC Machinery gene
  NHN23_RS06560 comGD 1341843..1342286 (+) 444 WP_253345727.1 competence type IV pilus minor pilin ComGD -
  NHN23_RS06565 comGF 1342273..1342986 (+) 714 WP_253345716.1 competence type IV pilus minor pilin ComGF -
  NHN23_RS06570 - 1343151..1343666 (+) 516 WP_021339247.1 shikimate kinase -
  NHN23_RS06575 gcvT 1343845..1344936 (+) 1092 WP_021339246.1 glycine cleavage system aminomethyltransferase GcvT -
  NHN23_RS06580 gcvPA 1344954..1346306 (+) 1353 WP_021339245.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12081.22 Da        Isoelectric Point: 8.4896

>NTDB_id=703282 NHN23_RS06555 WP_253345714.1 1341536..1341862(+) (comGC) [Staphylococcus equorum strain PU1]
MHFLKNLKKLFNKEAFTLIEMLLVLLIISLLLILIIPDIAKQSSHIQTAGCEAQIKMINSQIEAYSLKYNKKPTSIDELV
SEGYINESQKRCKTGSTISINNGEAVAN

Nucleotide


Download         Length: 327 bp        

>NTDB_id=703282 NHN23_RS06555 WP_253345714.1 1341536..1341862(+) (comGC) [Staphylococcus equorum strain PU1]
ATGCATTTTTTGAAAAACTTAAAAAAACTATTTAATAAAGAAGCATTTACACTTATAGAAATGTTGCTTGTTTTATTAAT
CATAAGTTTATTGCTTATTTTAATCATACCTGACATTGCAAAACAATCATCACATATACAAACTGCTGGTTGTGAAGCTC
AAATAAAAATGATAAACAGTCAAATTGAAGCTTATTCATTAAAATATAATAAAAAGCCAACATCAATCGATGAACTCGTC
TCAGAAGGATATATTAACGAAAGTCAAAAGCGATGTAAAACTGGTTCGACAATTTCAATAAATAATGGTGAAGCAGTTGC
TAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

68.627

94.444

0.648
  comGC Staphylococcus aureus MW2

68.627

94.444

0.648
  comYC Streptococcus gordonii str. Challis substr. CH1

43.81

97.222

0.426
  comGC/cglC Streptococcus mitis NCTC 12261

39.815

100

0.398
  comGC/cglC Streptococcus mitis SK321

43.478

85.185

0.37
  comGC/cglC Streptococcus pneumoniae R6

42.391

85.185

0.361
  comGC/cglC Streptococcus pneumoniae D39

42.391

85.185

0.361
  comGC/cglC Streptococcus pneumoniae Rx1

42.391

85.185

0.361
  comGC/cglC Streptococcus pneumoniae TIGR4

42.391

85.185

0.361