Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   VCASEI_RS08455 Genome accession   NZ_AP018680
Coordinates   1788490..1788816 (-) Length   108 a.a.
NCBI ID   WP_374700994.1    Uniprot ID   -
Organism   Vibrio casei strain DSM 22364     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1783490..1793816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCASEI_RS08430 yfbR 1784683..1785276 (+) 594 WP_086960916.1 5'-deoxynucleotidase -
  VCASEI_RS08435 - 1785322..1786692 (+) 1371 WP_086960914.1 anti-phage deoxyguanosine triphosphatase -
  VCASEI_RS08440 - 1786750..1787133 (-) 384 WP_086960912.1 cytochrome b562 -
  VCASEI_RS08445 - 1787220..1787858 (-) 639 WP_089110200.1 tRNA-uridine aminocarboxypropyltransferase -
  VCASEI_RS08450 rrtA 1787869..1788429 (+) 561 WP_089110201.1 rhombosortase -
  VCASEI_RS08455 comEA 1788490..1788816 (-) 327 WP_374700994.1 ComEA family DNA-binding protein Machinery gene
  VCASEI_RS08460 ppiD 1789026..1790885 (-) 1860 WP_086960904.1 peptidylprolyl isomerase -
  VCASEI_RS08465 - 1791108..1791380 (-) 273 WP_086960902.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 11934.64 Da        Isoelectric Point: 5.7011

>NTDB_id=70321 VCASEI_RS08455 WP_374700994.1 1788490..1788816(-) (comEA) [Vibrio casei strain DSM 22364]
MRTVFMTLLSMGLMFNIAYAEVKAEESSEVSTNKNTQEKHAGINITVNVNTANAEEIASMLKGIGAKKAQDIVDYRNEHG
NFMSLEDLMNVKGIGQATVQKNQDRILL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=70321 VCASEI_RS08455 WP_374700994.1 1788490..1788816(-) (comEA) [Vibrio casei strain DSM 22364]
ATTCGAACTGTTTTTATGACGTTATTGTCTATGGGGTTGATGTTTAATATTGCTTATGCAGAAGTTAAAGCCGAAGAGAG
TAGTGAAGTAAGTACCAATAAGAATACGCAAGAAAAGCATGCAGGTATTAATATTACTGTTAATGTGAATACTGCTAATG
CTGAGGAAATTGCCTCTATGCTTAAAGGTATTGGGGCTAAGAAGGCACAAGATATTGTTGATTATAGAAATGAGCATGGA
AACTTTATGTCATTAGAGGACTTAATGAACGTTAAGGGGATTGGTCAAGCGACCGTGCAAAAAAATCAGGATCGCATTTT
GTTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

51.923

96.296

0.5
  comEA Vibrio cholerae C6706

49.074

100

0.491
  comEA Vibrio cholerae strain A1552

49.074

100

0.491
  comEA Vibrio parahaemolyticus RIMD 2210633

71.831

65.741

0.472
  comE1/comEA Haemophilus influenzae Rd KW20

44.643

100

0.463
  comEA/comE1 Glaesserella parasuis strain SC1401

41.071

100

0.426
  comEA Acinetobacter baylyi ADP1

36.752

100

0.398

Multiple sequence alignment