Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NI383_RS23430 Genome accession   NZ_CP099955
Coordinates   3276968..3278080 (-) Length   370 a.a.
NCBI ID   WP_069524297.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Isc4A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3271968..3283080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI383_RS23400 (NI383_23555) hemF 3272429..3273346 (-) 918 WP_315868360.1 oxygen-dependent coproporphyrinogen oxidase -
  NI383_RS23405 (NI383_23560) - 3273394..3273951 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  NI383_RS23410 (NI383_23565) purE 3274151..3274636 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  NI383_RS23415 (NI383_23570) - 3274641..3275768 (+) 1128 WP_015297510.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  NI383_RS23420 (NI383_23575) - 3275838..3276407 (-) 570 WP_315868361.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  NI383_RS23425 (NI383_23580) - 3276486..3276965 (-) 480 WP_005461440.1 DUF494 family protein -
  NI383_RS23430 (NI383_23585) dprA 3276968..3278080 (-) 1113 WP_069524297.1 DNA-processing protein DprA Machinery gene
  NI383_RS23435 (NI383_23590) - 3278064..3279158 (-) 1095 WP_315868362.1 LysM peptidoglycan-binding domain-containing protein -
  NI383_RS23440 (NI383_23595) def 3279297..3279815 (+) 519 WP_005461416.1 peptide deformylase -
  NI383_RS23445 (NI383_23600) fmt 3279849..3280796 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  NI383_RS23450 (NI383_23605) rsmB 3280877..3282160 (+) 1284 WP_015297514.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39869.47 Da        Isoelectric Point: 6.5879

>NTDB_id=702912 NI383_RS23430 WP_069524297.1 3276968..3278080(-) (dprA) [Vibrio parahaemolyticus strain Isc4A]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLARRATENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=702912 NI383_RS23430 WP_069524297.1 3276968..3278080(-) (dprA) [Vibrio parahaemolyticus strain Isc4A]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACTTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGATTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGAGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCGGCGAGCAACAGAGAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAGAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.324

100

0.843
  dprA Vibrio cholerae strain A1552

59.189

100

0.592
  dprA Glaesserella parasuis strain SC1401

47.185

100

0.476
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Neisseria meningitidis strain C311

37.692

100

0.397
  dprA Neisseria meningitidis MC58

37.692

100

0.397
  dprA Neisseria gonorrhoeae MS11

35.825

100

0.376
  dprA Neisseria gonorrhoeae strain FA1090

35.567

100

0.373