Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NI376_RS02580 Genome accession   NZ_CP099943
Coordinates   563186..564409 (+) Length   407 a.a.
NCBI ID   WP_308374734.1    Uniprot ID   -
Organism   Pseudoalteromonas piscicida strain BM7A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 558186..569409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI376_RS02560 (NI376_02555) ampE 558257..559108 (-) 852 WP_130164706.1 beta-lactamase regulator AmpE -
  NI376_RS02565 (NI376_02560) ampD 559115..559657 (-) 543 WP_308374102.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NI376_RS02570 (NI376_02565) nadC 561146..561988 (+) 843 WP_308374733.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NI376_RS02575 - 562658..563119 (+) 462 WP_308374103.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NI376_RS02580 (NI376_02575) pilC 563186..564409 (+) 1224 WP_308374734.1 type II secretion system F family protein Machinery gene
  NI376_RS02585 (NI376_02580) pilD 564543..565421 (+) 879 WP_308374104.1 A24 family peptidase Machinery gene
  NI376_RS02590 (NI376_02585) coaE 565431..566060 (+) 630 WP_308374105.1 dephospho-CoA kinase -
  NI376_RS02595 (NI376_02590) pilB 566156..567832 (+) 1677 WP_222242591.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NI376_RS02600 (NI376_02595) rlmM 568119..569204 (-) 1086 WP_010607344.1 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44602.57 Da        Isoelectric Point: 9.8091

>NTDB_id=702753 NI376_RS02580 WP_308374734.1 563186..564409(+) (pilC) [Pseudoalteromonas piscicida strain BM7A]
MKKNESNLDTFIWAGFNSRGKKLNGEMTGQSVALVKAQLRKQGITPSKVKRKPKPLFGFSGTQKIKSVDIATTTRQIATM
LMAGVSLVQTLDMLARGIKNKSLSKLIAHIADEVKAGQPLAKSLRAYPRYFDELYCDLVHSGEQSGALDTIFDRIALYKE
KTEALKSKIKKALFYPIAVIAVALIVTGILLIFVVPQFQDIFNGFGAELPAFTLMVIAISEFMQEYWWIFVLGIGLFGYT
YKEMLIRSPAVKHFNDRMVLRIPVIGEILKKAAVARYARTLSTTFAAGVPLGDALDSAAGASGNIIYKNAIKEIKAEVNS
GNQMHWAMHNTKVFPDMVVQMVSIGEESGSLDGMLAKVANIYEQEVDDAVDGLSSLLEPLIMVVLGVLIGGLIIAMYLPI
FQLGSVI

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=702753 NI376_RS02580 WP_308374734.1 563186..564409(+) (pilC) [Pseudoalteromonas piscicida strain BM7A]
ATCAAAAAAAACGAATCGAACCTTGATACCTTTATTTGGGCTGGCTTTAATAGTCGAGGCAAAAAGCTCAATGGCGAAAT
GACTGGACAGAGCGTGGCTCTAGTTAAGGCTCAGTTACGTAAACAAGGAATCACCCCTTCCAAAGTTAAGCGAAAACCAA
AACCCCTCTTTGGGTTTTCTGGAACACAAAAAATTAAATCTGTAGATATAGCTACTACAACTCGACAGATAGCAACTATG
CTAATGGCTGGTGTTTCTTTGGTACAAACATTGGATATGCTTGCTCGAGGAATCAAAAATAAAAGCTTATCTAAGCTGAT
TGCTCATATCGCGGATGAAGTAAAGGCAGGCCAGCCCCTTGCTAAATCTTTAAGGGCTTACCCAAGGTATTTTGATGAAC
TTTATTGCGACCTTGTTCATTCAGGTGAACAGTCTGGTGCACTAGATACCATATTTGACCGCATAGCGCTTTATAAAGAG
AAAACAGAAGCGCTTAAATCTAAAATTAAGAAAGCGTTATTTTATCCAATCGCTGTTATTGCTGTGGCTTTAATTGTAAC
TGGTATTTTGCTTATTTTCGTTGTACCTCAATTTCAAGATATATTTAACGGCTTCGGTGCAGAACTCCCCGCCTTTACCC
TAATGGTTATCGCAATTTCCGAATTTATGCAGGAATACTGGTGGATATTTGTGCTTGGTATTGGCTTATTTGGTTATACC
TATAAAGAAATGCTTATTCGCAGTCCTGCGGTAAAGCATTTTAACGACCGTATGGTTTTACGTATTCCAGTGATTGGCGA
GATCCTTAAAAAAGCGGCGGTGGCGCGTTATGCTCGTACGCTTTCGACTACCTTTGCCGCGGGTGTTCCACTTGGTGATG
CACTTGATTCTGCTGCTGGTGCGTCAGGCAACATTATCTACAAAAACGCAATTAAAGAAATAAAAGCAGAAGTTAACTCG
GGTAACCAAATGCACTGGGCAATGCATAACACCAAAGTCTTCCCAGATATGGTGGTGCAAATGGTGTCTATCGGTGAAGA
ATCGGGTTCTCTAGATGGCATGCTGGCAAAGGTTGCCAACATTTATGAGCAAGAAGTCGATGATGCGGTGGATGGCCTAT
CTAGCCTATTAGAACCATTAATTATGGTGGTACTCGGCGTACTGATCGGTGGCCTGATTATCGCCATGTACTTACCGATA
TTCCAACTAGGTTCAGTTATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(278-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.194

97.543

0.577
  pilC Legionella pneumophila strain ERS1305867

54.545

100

0.545
  pilC Acinetobacter baylyi ADP1

51.358

99.509

0.511
  pilC Acinetobacter baumannii D1279779

51.111

99.509

0.509
  pilC Vibrio campbellii strain DS40M4

43.72

100

0.445
  pilC Vibrio cholerae strain A1552

44.776

98.771

0.442
  pilG Neisseria meningitidis 44/76-A

43.467

97.789

0.425
  pilG Neisseria gonorrhoeae MS11

43.467

97.789

0.425