Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NI384_RS02895 Genome accession   NZ_CP099928
Coordinates   588703..589926 (-) Length   407 a.a.
NCBI ID   WP_308385409.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM24B     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 583703..594926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI384_RS02855 (NI384_02855) rpsP 583837..584085 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  NI384_RS02860 (NI384_02860) rimM 584114..584662 (+) 549 WP_005462552.1 ribosome maturation factor RimM -
  NI384_RS02865 (NI384_02865) trmD 584690..585433 (+) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NI384_RS02870 (NI384_02870) rplS 585475..585828 (+) 354 WP_005462554.1 50S ribosomal protein L19 -
  NI384_RS02875 (NI384_02875) yacG 586123..586317 (-) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  NI384_RS02880 (NI384_02880) zapD 586386..587126 (-) 741 WP_005480890.1 cell division protein ZapD -
  NI384_RS02885 (NI384_02885) coaE 587154..587768 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  NI384_RS02890 (NI384_02890) pilD 587769..588638 (-) 870 WP_025533026.1 A24 family peptidase Machinery gene
  NI384_RS02895 (NI384_02895) pilC 588703..589926 (-) 1224 WP_308385409.1 type II secretion system F family protein Machinery gene
  NI384_RS02900 (NI384_02900) pilB 589950..591635 (-) 1686 WP_308385410.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NI384_RS02905 (NI384_02905) - 591642..592085 (-) 444 WP_149151214.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NI384_RS02910 (NI384_02910) nadC 592349..593236 (-) 888 WP_025523107.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NI384_RS02915 (NI384_02915) ampD 593329..593880 (+) 552 WP_025536234.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45278.42 Da        Isoelectric Point: 10.3845

>NTDB_id=702679 NI384_RS02895 WP_308385409.1 588703..589926(-) (pilC) [Vibrio parahaemolyticus strain BM24B]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFDAELPWFTRQVLDLSAWTQNWSPFIALGSISVFISA
RVLSKRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=702679 NI384_RS02895 WP_308385409.1 588703..589926(-) (pilC) [Vibrio parahaemolyticus strain BM24B]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGGAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTG
GTAACCGGTGTGCCGCTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGCAACCATTTTGACCCGCTAT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCCACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGATGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCAGTGTATTTATCTCCGCG
AGAGTACTCTCTAAGCGTTCAGATTCTTTTCGTTTAATGCTTAACCGATCTGTACTTAAGTTTCCAGTCCTTGGGGCGGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACACTCGCTACGAGCTTTACGGCGGGCATTCCGATTCTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.749

100

0.857
  pilC Vibrio cholerae strain A1552

74.074

99.509

0.737
  pilC Acinetobacter baylyi ADP1

42.5

98.28

0.418
  pilC Acinetobacter baumannii D1279779

41.191

99.017

0.408
  pilG Neisseria gonorrhoeae MS11

40.247

99.509

0.4
  pilG Neisseria meningitidis 44/76-A

40

99.509

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.657

97.297

0.396
  pilC Legionella pneumophila strain ERS1305867

39.558

100

0.396