Detailed information NTG0702678

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NI384_RS02890
• Genome accession: NZ_CP099928
• Coordinates: 587769..588638 (-)
• Length: 289 a.a.
• NCBI ID: WP_025533026.1
• Uniprot ID: A0AA41A9T5
• Organism: Vibrio parahaemolyticus strain BM24B
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 582769..593638

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NI384_RS02855 (NI384_02855)	rpsP	583837..584085 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
NI384_RS02860 (NI384_02860)	rimM	584114..584662 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
NI384_RS02865 (NI384_02865)	trmD	584690..585433 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
NI384_RS02870 (NI384_02870)	rplS	585475..585828 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
NI384_RS02875 (NI384_02875)	yacG	586123..586317 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
NI384_RS02880 (NI384_02880)	zapD	586386..587126 (-)	741	WP_005480890.1	cell division protein ZapD	-
NI384_RS02885 (NI384_02885)	coaE	587154..587768 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
NI384_RS02890 (NI384_02890)	pilD	587769..588638 (-)	870	WP_025533026.1	A24 family peptidase	Machinery gene
NI384_RS02895 (NI384_02895)	pilC	588703..589926 (-)	1224	WP_308385409.1	type II secretion system F family protein	Machinery gene
NI384_RS02900 (NI384_02900)	pilB	589950..591635 (-)	1686	WP_308385410.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NI384_RS02905 (NI384_02905)	-	591642..592085 (-)	444	WP_149151214.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NI384_RS02910 (NI384_02910)	nadC	592349..593236 (-)	888	WP_025523107.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32405.49 Da
• Isoelectric Point: 7.1971

>NTDB_id=702678 NI384_RS02890 WP_025533026.1 587769..588638(-) (pilD) [Vibrio parahaemolyticus strain BM24B]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=702678 NI384_RS02890 WP_025533026.1 587769..588638(-) (pilD) [Vibrio parahaemolyticus strain BM24B]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTAGCTTATCATTTTGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45