Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NI386_RS23430 Genome accession   NZ_CP099924
Coordinates   3260564..3261676 (-) Length   370 a.a.
NCBI ID   WP_025621718.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Isc7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3255564..3266676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI386_RS23400 (NI386_24030) hemF 3256025..3256942 (-) 918 WP_069485394.1 oxygen-dependent coproporphyrinogen oxidase -
  NI386_RS23405 (NI386_24035) - 3256990..3257547 (-) 558 WP_308390485.1 L-threonylcarbamoyladenylate synthase -
  NI386_RS23410 (NI386_24040) purE 3257747..3258232 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  NI386_RS23415 (NI386_24045) - 3258237..3259364 (+) 1128 WP_031430799.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  NI386_RS23420 (NI386_24050) - 3259434..3260003 (-) 570 WP_021449061.1 type I DNA topoisomerase -
  NI386_RS23425 (NI386_24055) - 3260082..3260561 (-) 480 WP_005461440.1 DUF494 family protein -
  NI386_RS23430 (NI386_24060) dprA 3260564..3261676 (-) 1113 WP_025621718.1 DNA-processing protein DprA Machinery gene
  NI386_RS23435 (NI386_24065) - 3261660..3262754 (-) 1095 WP_005497418.1 LysM peptidoglycan-binding domain-containing protein -
  NI386_RS23440 (NI386_24070) def 3262893..3263411 (+) 519 WP_005461416.1 peptide deformylase -
  NI386_RS23445 (NI386_24075) fmt 3263445..3264392 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  NI386_RS23450 (NI386_24080) rsmB 3264473..3265756 (+) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39899.49 Da        Isoelectric Point: 6.2339

>NTDB_id=702658 NI386_RS23430 WP_025621718.1 3260564..3261676(-) (dprA) [Vibrio parahaemolyticus strain Isc7]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIQKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=702658 NI386_RS23430 WP_025621718.1 3260564..3261676(-) (dprA) [Vibrio parahaemolyticus strain Isc7]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCAGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAATTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCCAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACTTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCAAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.324

100

0.843
  dprA Vibrio cholerae strain A1552

58.378

100

0.584
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Neisseria meningitidis strain C311

38.462

100

0.405
  dprA Neisseria meningitidis MC58

38.462

100

0.405
  dprA Neisseria gonorrhoeae MS11

36.598

100

0.384
  dprA Neisseria gonorrhoeae strain FA1090

36.34

100

0.381