Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NI390_RS12160 Genome accession   NZ_CP099915
Coordinates   2598898..2600124 (+) Length   408 a.a.
NCBI ID   WP_222763978.1    Uniprot ID   -
Organism   Vibrio fluvialis strain Isc7A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2593898..2605124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI390_RS12135 (NI390_12130) fldB 2594398..2594919 (+) 522 WP_020430452.1 flavodoxin FldB -
  NI390_RS12140 (NI390_12135) ampD 2594924..2595475 (-) 552 WP_055452472.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NI390_RS12145 (NI390_12140) nadC 2595628..2596515 (+) 888 WP_308413212.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NI390_RS12150 (NI390_12145) pilA 2596747..2597166 (+) 420 WP_222763982.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NI390_RS12155 (NI390_12150) pilB 2597245..2598862 (+) 1618 Protein_2312 type IV-A pilus assembly ATPase PilB -
  NI390_RS12160 (NI390_12155) pilC 2598898..2600124 (+) 1227 WP_222763978.1 type II secretion system F family protein Machinery gene
  NI390_RS12165 (NI390_12160) pilD 2600176..2601045 (+) 870 WP_222763976.1 A24 family peptidase Machinery gene
  NI390_RS12170 (NI390_12165) coaE 2601048..2601656 (+) 609 WP_222763974.1 dephospho-CoA kinase -
  NI390_RS12175 (NI390_12170) zapD 2601689..2602429 (+) 741 WP_222763972.1 cell division protein ZapD -
  NI390_RS12180 (NI390_12175) yacG 2602484..2602681 (+) 198 WP_020332195.1 DNA gyrase inhibitor YacG -
  NI390_RS12185 (NI390_12180) parC 2602732..2605005 (-) 2274 WP_047459105.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44642.86 Da        Isoelectric Point: 10.4880

>NTDB_id=702493 NI390_RS12160 WP_222763978.1 2598898..2600124(+) (pilC) [Vibrio fluvialis strain Isc7A]
MKPTKGPELKNYRWKGVNSTGKKVAGQTLAISEIEVRDKLKEQHIQVKKIKKGSVSVLTRLTNQVKTKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPISKAMRTASTHFDALYVDLIQTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPSMVILVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSAGAFIASLGLVFG
IKAARKKSFVVRLKTSQLSLRFPIIGGVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQDVHRHTAA
GMPMYIAMRNTQAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGIVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=702493 NI390_RS12160 WP_222763978.1 2598898..2600124(+) (pilC) [Vibrio fluvialis strain Isc7A]
ATGAAACCGACCAAAGGCCCTGAGTTAAAAAACTATCGCTGGAAAGGCGTCAACAGCACTGGCAAGAAAGTCGCGGGACA
GACACTGGCTATCAGTGAAATAGAAGTCCGCGACAAACTGAAAGAACAGCACATTCAGGTTAAGAAGATCAAAAAAGGCA
GCGTGTCAGTTCTGACTCGTCTCACCAATCAGGTCAAAACTAAAGACATCACCATCCTCACCCGCCAGCTTGCCACCATG
CTGACCACCGGAGTGCCGATTGTGCAGGCACTTAAATTGGTCGGCGATAATCATCGTAAAGCCGAGATGAAATCGATTCT
GGCGCAAATTACCAAAGGCGTCGAAGCCGGTACGCCGATTTCCAAAGCGATGCGTACTGCTAGCACTCACTTTGACGCGT
TGTACGTCGACTTAATTCAGACTGGCGAGCAGTCCGGCAATCTTGCCGAAGTCTTTGAACGCCTTGCCACCTATCGGGAA
AAAAGCGAGCAACTGCGCGCGAAAGTAATCAAAGCGCTGATCTATCCCAGCATGGTCATTCTGGTGGCACTCGGCGTCTC
CTATTTGATGCTGACGATGGTCATTCCAGAGTTCGAAAGTATGTTCAAGGGTTTTGGGGCTGAACTGCCTTGGTTTACTC
AGCAGATCCTCAAGTTATCGCATGGGGTACAAGCCTACAGTGCGGGGGCGTTCATCGCGTCATTGGGCTTGGTGTTTGGC
ATCAAAGCAGCACGGAAAAAATCCTTCGTCGTCCGTCTTAAAACCAGCCAGCTCAGCCTGCGTTTTCCAATCATTGGCGG
TGTGCTTGCCAAAGCCGCAATTGCTAAATTCAGCCGCACTCTGGCGACCAGCTTCAGTGCGGGAATTCCGATACTCGCCA
GCCTCAAAACCACCGCTAAAACGGCAGGTAACGTGCATTTTGAAACCGCCATTCAGGATGTTCACCGCCATACGGCAGCA
GGGATGCCGATGTATATTGCAATGCGCAACACACAAGCCTTTCCGGAAATGGTGTTGCAAATGGTGATGATCGGCGAGGA
GTCCGGCAAGCTCGACGACATGCTCAATAAAGTCGCCACCATCTATGAGTTTGAAGTCGACAACACCGTCGACAATCTGG
GCAAAATTCTTGAACCGCTGATTATCGTATTTTTGGGCATTGTGGTCGGTGGATTGGTGGTGGCGATGTACCTGCCAATC
TTTAACTTAATGAGTGTATTAGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

86.765

100

0.868
  pilC Vibrio campbellii strain DS40M4

72.861

100

0.73
  pilC Acinetobacter baumannii D1279779

41.667

100

0.417
  pilC Legionella pneumophila strain ERS1305867

41.353

97.794

0.404
  pilC Acinetobacter baylyi ADP1

41.31

97.304

0.402
  pilC Pseudomonas stutzeri DSM 10701

40.152

97.059

0.39
  pilG Neisseria gonorrhoeae MS11

39.599

97.794

0.387
  pilG Neisseria meningitidis 44/76-A

39.098

97.794

0.382