Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NH461_RS16320 Genome accession   NZ_CP099734
Coordinates   3529353..3530453 (-) Length   366 a.a.
NCBI ID   WP_261601308.1    Uniprot ID   -
Organism   Photobacterium sp. TY1-4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3524353..3535453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH461_RS16290 (NH461_16250) hemF 3524903..3525808 (-) 906 WP_261602934.1 oxygen-dependent coproporphyrinogen oxidase -
  NH461_RS16295 (NH461_16255) tsaC 3525815..3526372 (-) 558 WP_261601303.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  NH461_RS16300 (NH461_16260) purE 3526583..3527074 (+) 492 WP_261601304.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  NH461_RS16305 (NH461_16265) - 3527071..3528186 (+) 1116 WP_261601305.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  NH461_RS16310 (NH461_16270) - 3528295..3528849 (-) 555 WP_261601306.1 type I DNA topoisomerase -
  NH461_RS16315 (NH461_16275) - 3528877..3529350 (-) 474 WP_261601307.1 DUF494 family protein -
  NH461_RS16320 (NH461_16280) dprA 3529353..3530453 (-) 1101 WP_261601308.1 DNA-processing protein DprA Machinery gene
  NH461_RS16325 (NH461_16285) - 3530450..3531535 (-) 1086 WP_261601309.1 LysM peptidoglycan-binding domain-containing protein -
  NH461_RS16330 (NH461_16290) def 3531861..3532382 (+) 522 WP_261601310.1 peptide deformylase -
  NH461_RS16335 (NH461_16295) fmt 3532407..3533351 (+) 945 WP_261601311.1 methionyl-tRNA formyltransferase -
  NH461_RS16340 (NH461_16300) rsmB 3533466..3534746 (+) 1281 WP_261601312.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39480.18 Da        Isoelectric Point: 6.4138

>NTDB_id=701409 NH461_RS16320 WP_261601308.1 3529353..3530453(-) (dprA) [Photobacterium sp. TY1-4]
MSEDDLVAWLTLAAVPYLGGHRIHQLLPYASPRQLCRMSAEELNGIGLKPRQVEALLRPNARRLERCLQWAQAAHQTIIP
LDSPDYPPLLREIASAPPLLFVRGDPRWLHQPQIAVVGSRSASIDGRESAYAFAAALAAADYVVTSGLALGVDGQAHAGA
LRHGGGTVAVLGSGLERLYPARHRELAGQIVEQGALVSEFWPDEAPRPQNFPRRNRVISGLSVGVLVIEAAEKSGSLITA
RYALEQGREVFALPGSIHVPGSRGCNALIKSGAKLVESPVDIFEEIGSLTECVKSKQLDMPLPQPENEELPFSSVLANVG
NEATPVDVVAERCQQPVHEVMTQLLELELRGVVATVPGGYIRTRRG

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=701409 NH461_RS16320 WP_261601308.1 3529353..3530453(-) (dprA) [Photobacterium sp. TY1-4]
ATGAGCGAGGACGATCTGGTCGCGTGGCTGACCTTGGCTGCGGTGCCTTATCTAGGGGGGCACCGGATCCATCAGTTACT
GCCCTATGCCTCGCCCCGGCAACTGTGCCGGATGTCGGCTGAAGAGTTAAATGGCATCGGCTTGAAGCCGCGCCAAGTTG
AGGCATTGCTTCGGCCGAATGCGCGCCGTCTTGAGCGCTGCTTGCAATGGGCGCAGGCAGCGCATCAAACCATTATCCCC
CTTGATTCGCCTGATTATCCGCCGCTGCTCAGGGAAATCGCCTCGGCGCCGCCGCTCTTGTTTGTGCGTGGCGATCCCCG
GTGGCTGCATCAGCCCCAGATTGCCGTGGTCGGCAGCCGTTCTGCCAGCATTGACGGGCGCGAATCGGCCTATGCGTTCG
CAGCCGCGCTGGCGGCCGCGGACTATGTCGTGACCAGTGGATTGGCATTAGGCGTCGATGGCCAGGCCCATGCCGGCGCG
CTGCGTCATGGTGGTGGGACTGTGGCCGTGTTGGGCTCGGGGCTGGAGCGGCTCTACCCGGCCCGTCACCGGGAGTTGGC
GGGGCAAATTGTCGAACAAGGGGCGTTGGTTTCTGAGTTCTGGCCGGATGAAGCGCCCCGGCCGCAAAACTTTCCCCGCC
GCAACCGAGTGATCAGTGGCCTGTCCGTTGGCGTATTAGTGATCGAAGCGGCAGAAAAAAGCGGATCGCTGATCACAGCG
CGCTATGCCCTTGAACAAGGACGCGAAGTGTTTGCCCTCCCCGGTTCGATCCATGTACCCGGTAGTCGTGGATGTAATGC
ATTGATCAAATCCGGTGCTAAATTGGTAGAAAGTCCGGTCGATATTTTTGAGGAGATTGGGAGTCTAACCGAGTGTGTAA
AAAGTAAGCAGTTAGACATGCCGTTACCACAACCTGAAAATGAAGAATTGCCATTTTCATCGGTGTTGGCTAACGTAGGC
AATGAAGCAACACCCGTAGATGTAGTTGCTGAACGCTGTCAACAACCCGTGCATGAAGTCATGACGCAATTGCTGGAACT
GGAATTGCGAGGGGTTGTTGCCACAGTGCCCGGTGGCTATATCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(309-359)

DNA recombination-mediator protein A (DNA_processg_A)

(72-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

55.191

100

0.552
  dprA Vibrio cholerae strain A1552

53.495

100

0.544
  dprA Glaesserella parasuis strain SC1401

46.237

100

0.47
  dprA Neisseria meningitidis MC58

38.519

100

0.426
  dprA Neisseria meningitidis strain C311

38.519

100

0.426
  dprA Neisseria gonorrhoeae strain FA1090

37.626

100

0.407
  dprA Neisseria gonorrhoeae MS11

37.374

100

0.404
  dprA Legionella pneumophila strain ERS1305867

43.161

89.891

0.388
  dprA Haemophilus influenzae Rd KW20

49.123

77.869

0.383