Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NH461_RS02000 Genome accession   NZ_CP099734
Coordinates   409327..410547 (-) Length   406 a.a.
NCBI ID   WP_261601680.1    Uniprot ID   -
Organism   Photobacterium sp. TY1-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 404327..415547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH461_RS01975 (NH461_01970) mutT 406227..406625 (+) 399 WP_261601675.1 8-oxo-dGTP diphosphatase MutT -
  NH461_RS01980 (NH461_01975) yacG 406739..406954 (-) 216 WP_261601676.1 DNA gyrase inhibitor YacG -
  NH461_RS01985 (NH461_01980) zapD 406962..407699 (-) 738 WP_261601677.1 cell division protein ZapD -
  NH461_RS01990 (NH461_01985) coaE 407728..408333 (-) 606 WP_261601678.1 dephospho-CoA kinase -
  NH461_RS01995 (NH461_01990) pilD 408336..409205 (-) 870 WP_261601679.1 prepilin peptidase Machinery gene
  NH461_RS02000 (NH461_01995) pilC 409327..410547 (-) 1221 WP_261601680.1 type II secretion system F family protein Machinery gene
  NH461_RS02005 (NH461_02000) pilB 410576..412381 (-) 1806 WP_315903232.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NH461_RS02010 (NH461_02005) - 412385..412786 (-) 402 WP_315903233.1 pilin -
  NH461_RS02020 (NH461_02015) nadC 413125..414012 (-) 888 WP_261602808.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NH461_RS02025 (NH461_02020) ampD 414278..414832 (+) 555 WP_261601681.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44537.60 Da        Isoelectric Point: 10.2483

>NTDB_id=701386 NH461_RS02000 WP_261601680.1 409327..410547(-) (pilC) [Photobacterium sp. TY1-4]
MSQSTKIRHYHWRGVNQKGKKVSGITLGFQEQDVRKILNDQLIQVKKIKRCKPSALSQLKNQLKPADITAITRQLATMTN
SGVPVVQGLNMMASSHHKSEARAVLTQVTAQVEAGASLSRAMQTSSPLFDKFYCDLVATGEQTGHLGDVFGRIATYREKS
EAMRKKVIKAMIYPAMVTFTAIGVTILMLVMVIPQFAQIFAGFGAELPWFTRQVLHASDVMITHGPIMAAALVLISLITS
YQYKRVISFRRKVHQLLLRLPLLGEITLKATVARFARTLATTFSAGIPLLSGLQSAGKTADNLYIEQAVAEVHAATAAGM
PLHIALRQSGVFPELMLQMTQIGEESGSLDDMLNKMALLFEDEVENIVDNLGKIIEPVIILFLGGLVASLLFAMYMPIIK
LMSVIG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=701386 NH461_RS02000 WP_261601680.1 409327..410547(-) (pilC) [Photobacterium sp. TY1-4]
ATGAGCCAAAGCACGAAGATTCGCCACTATCACTGGCGTGGGGTCAACCAGAAAGGTAAAAAAGTCAGTGGGATTACGCT
TGGCTTTCAGGAGCAGGATGTCCGTAAAATCCTGAACGACCAGTTGATCCAGGTGAAAAAGATCAAACGGTGCAAGCCCT
CGGCTCTCAGTCAACTCAAAAACCAGCTCAAGCCGGCGGATATCACCGCCATCACCCGCCAGCTGGCCACCATGACCAAC
TCCGGCGTGCCTGTCGTCCAGGGACTGAATATGATGGCCAGCAGCCACCATAAATCTGAAGCCAGAGCGGTGCTGACCCA
AGTAACCGCCCAGGTGGAAGCCGGCGCCTCGCTGTCCCGGGCAATGCAGACCAGCTCGCCGCTGTTCGATAAGTTCTACT
GCGATTTAGTCGCGACCGGTGAGCAAACCGGCCATCTGGGTGACGTGTTCGGTCGTATCGCCACCTACCGGGAAAAAAGC
GAAGCCATGCGCAAGAAAGTCATCAAGGCGATGATTTACCCGGCCATGGTTACCTTCACCGCGATTGGGGTCACCATCCT
GATGCTGGTGATGGTGATCCCGCAATTTGCGCAAATTTTTGCCGGTTTCGGTGCCGAACTACCCTGGTTTACCCGCCAGG
TGCTCCACGCCTCCGATGTCATGATCACCCACGGCCCCATAATGGCTGCAGCCCTTGTGCTGATCTCACTCATCACCAGC
TATCAATACAAGCGCGTCATCAGCTTCCGGCGCAAAGTACATCAACTGTTACTGCGTCTGCCTTTGCTGGGAGAAATTAC
CCTCAAAGCCACCGTGGCCCGTTTTGCCCGCACCCTGGCGACCACCTTCAGCGCCGGGATCCCGCTACTGAGCGGATTGC
AGTCGGCGGGAAAAACCGCCGATAACCTCTATATCGAGCAGGCGGTAGCGGAGGTCCATGCTGCGACCGCGGCCGGGATG
CCGCTGCATATCGCGCTGCGCCAGAGCGGTGTATTTCCCGAGTTGATGCTGCAAATGACCCAGATCGGCGAAGAGTCCGG
CTCACTCGATGACATGCTCAATAAAATGGCACTTCTGTTTGAGGATGAGGTCGAAAATATCGTCGACAACCTCGGGAAAA
TCATTGAGCCAGTCATCATCCTGTTCCTCGGTGGCTTAGTCGCCAGCCTCCTGTTTGCCATGTACATGCCGATCATCAAG
CTGATGAGCGTGATCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

51.358

99.754

0.512
  pilC Vibrio campbellii strain DS40M4

50.623

98.768

0.5
  pilG Neisseria meningitidis 44/76-A

41.432

96.305

0.399
  pilC Acinetobacter baumannii D1279779

40.452

98.03

0.397
  pilG Neisseria gonorrhoeae MS11

40.921

96.305

0.394
  pilC Acinetobacter baylyi ADP1

39.348

98.276

0.387
  pilC Pseudomonas stutzeri DSM 10701

38.889

97.537

0.379
  pilC Legionella pneumophila strain ERS1305867

36.52

100

0.367