Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NGM67_RS18050 Genome accession   NZ_CP099545
Coordinates   2825509..2826735 (+) Length   408 a.a.
NCBI ID   WP_252689980.1    Uniprot ID   -
Organism   Photobacterium damselae strain XP-11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2820509..2831735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM67_RS18030 (NGM67_18030) pdhR 2821060..2821833 (-) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  NGM67_RS18035 (NGM67_18035) ampD 2822193..2822771 (-) 579 WP_068945541.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NGM67_RS18040 (NGM67_18040) - 2823255..2823752 (+) 498 WP_252689978.1 pilin -
  NGM67_RS18045 (NGM67_18045) pilB 2823752..2825443 (+) 1692 WP_252689979.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NGM67_RS18050 (NGM67_18050) pilC 2825509..2826735 (+) 1227 WP_252689980.1 type II secretion system F family protein Machinery gene
  NGM67_RS18055 (NGM67_18055) pilD 2826918..2827796 (+) 879 WP_106142459.1 prepilin peptidase Machinery gene
  NGM67_RS18060 (NGM67_18060) coaE 2827798..2828400 (+) 603 WP_109374725.1 dephospho-CoA kinase -
  NGM67_RS18065 (NGM67_18065) zapD 2828468..2829205 (+) 738 WP_005297594.1 cell division protein ZapD -
  NGM67_RS18070 (NGM67_18070) yacG 2829214..2829423 (+) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  NGM67_RS18075 (NGM67_18075) mutT 2829621..2830061 (+) 441 WP_158135331.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45044.21 Da        Isoelectric Point: 10.0330

>NTDB_id=700577 NGM67_RS18050 WP_252689980.1 2825509..2826735(+) (pilC) [Photobacterium damselae strain XP-11]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRVQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=700577 NGM67_RS18050 WP_252689980.1 2825509..2826735(+) (pilC) [Photobacterium damselae strain XP-11]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGGGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTGCGAGTGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ATCCCTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGCAGCGATGTAACAGCCATTACTCGCCAACTTGCGACCATG
ATCGAATCAGGGGTCCCAATTGTGCAAGCTCTGAAGCTAATGGCCAGTAGCCATCATAAAGCAGAAGTGCGCGCAGTATT
AACTCAGGTTAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCGCTAAAATCAAGTTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTTGGTCAAGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAAGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTCGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCAGAACTCCCTTGGTTTACTC
GCCAAGTATTAAAAGCTTCGGATTTCCTAATTAACTATGGGGGATACTTAGCTGTAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTCGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTCGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACTACTTTTAGTGCCGGTATTCCCCTACTAACAG
GTCTACAGTCGGCTGGTAAAACCGCAGGCAACTTACATATTGAAGAAGCTATTATGGAGGCGCATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTGCAGATGACCATGATCGGGGAAGA
GTCTGGCTCTCTTGATGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTGATCGGTGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.5

98.039

0.544
  pilG Neisseria meningitidis 44/76-A

42.222

99.265

0.419
  pilG Neisseria gonorrhoeae MS11

42.222

99.265

0.419
  pilC Acinetobacter baumannii D1279779

40.441

100

0.404
  pilC Pseudomonas stutzeri DSM 10701

40.049

99.755

0.4
  pilC Acinetobacter baylyi ADP1

40.05

97.304

0.39
  pilC Legionella pneumophila strain ERS1305867

37.94

97.549

0.37