Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NE411_RS11375 Genome accession   NZ_CP099450
Coordinates   2187552..2188790 (-) Length   412 a.a.
NCBI ID   WP_000990722.1    Uniprot ID   A0AAP4CG35
Organism   Bacillus pacificus strain ANSB901     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2182552..2193790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NE411_RS11350 (NE411_11330) spoVS 2182633..2182893 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  NE411_RS11355 (NE411_11335) - 2183042..2183836 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  NE411_RS11360 (NE411_11340) rny 2184001..2185563 (-) 1563 WP_000099774.1 ribonuclease Y -
  NE411_RS11365 (NE411_11345) - 2186049..2186471 (-) 423 Protein_2270 recombinase RecA -
  NE411_RS11370 (NE411_11350) recA 2186799..2187407 (-) 609 Protein_2271 recombinase RecA -
  NE411_RS11375 (NE411_11355) cinA 2187552..2188790 (-) 1239 WP_000990722.1 competence/damage-inducible protein CinA Machinery gene
  NE411_RS11380 (NE411_11360) pgsA 2188811..2189389 (-) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NE411_RS11385 (NE411_11365) - 2189453..2190364 (-) 912 WP_000137481.1 helix-turn-helix domain-containing protein -
  NE411_RS11390 (NE411_11370) - 2190386..2191171 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  NE411_RS11395 (NE411_11375) - 2191311..2191559 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  NE411_RS11400 (NE411_11380) ymfI 2191635..2192348 (-) 714 WP_000759611.1 elongation factor P 5-aminopentanone reductase -
  NE411_RS11405 (NE411_11385) yfmH 2192451..2193737 (-) 1287 WP_000411947.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45408.65 Da        Isoelectric Point: 5.0249

>NTDB_id=699583 NE411_RS11375 WP_000990722.1 2187552..2188790(-) (cinA) [Bacillus pacificus strain ANSB901]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDENALALISDYFKRTGREFTENNKKQALVLNGANVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=699583 NE411_RS11375 WP_000990722.1 2187552..2188790(-) (cinA) [Bacillus pacificus strain ANSB901]
ATGAATGCTGAAATTATTGCGGTTGGAACAGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAGCGTGCGGACATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACGAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTGAATGGGGCAAATGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAGATGAAGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCCAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAGTTTTTCTACGGGTATGACCAAGAGTTTCTGCATTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TATCTTCCGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTATTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCAGATGCTTCAGAACATAAAGAGCCGGGAACTGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.481
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.778

100

0.476
  cinA Streptococcus pneumoniae D39

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.539

100

0.473
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381