Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EL279_RS13620 Genome accession   NZ_AP018543
Coordinates   2686916..2688160 (-) Length   414 a.a.
NCBI ID   WP_089201952.1    Uniprot ID   -
Organism   Enterococcus faecalis strain KUB3007     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2681916..2693160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL279_RS13595 (KUB3007_C25720) - 2682386..2682772 (-) 387 WP_002359008.1 RicAFT regulatory complex protein RicA family protein -
  EL279_RS13600 (KUB3007_C25730) - 2682846..2683643 (-) 798 WP_002354864.1 TIGR00282 family metallophosphoesterase -
  EL279_RS13605 (KUB3007_C25740) rny 2683803..2685359 (-) 1557 WP_002354863.1 ribonuclease Y -
  EL279_RS13615 (KUB3007_C25750) recA 2685756..2686802 (-) 1047 WP_002354860.1 recombinase RecA Machinery gene
  EL279_RS13620 (KUB3007_C25760) cinA 2686916..2688160 (-) 1245 WP_089201952.1 competence/damage-inducible protein A Machinery gene
  EL279_RS13625 (KUB3007_C25770) - 2688352..2689551 (+) 1200 WP_002370127.1 hypothetical protein -
  EL279_RS13630 (KUB3007_C25780) - 2689631..2690260 (-) 630 WP_002365397.1 NAD(P)-dependent oxidoreductase -
  EL279_RS13635 (KUB3007_C25790) - 2690319..2690744 (-) 426 WP_002383201.1 Rrf2 family transcriptional regulator -
  EL279_RS13640 (KUB3007_C25800) - 2690833..2691216 (-) 384 WP_002358999.1 YccF domain-containing protein -
  EL279_RS13645 (KUB3007_C25810) - 2691380..2692171 (+) 792 WP_033786675.1 hypothetical protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45248.37 Da        Isoelectric Point: 4.7248

>NTDB_id=69946 EL279_RS13620 WP_089201952.1 2686916..2688160(-) (cinA) [Enterococcus faecalis strain KUB3007]
MKAEIIAVGTELLLGQVVNTNATFLSEELAALGIDVYYQTVVGDNGGRLETLLTEAEQRSDLIVLCGGLGPTEDDLTKQV
VAQHLHKSLVEDQEGLNRLHQFFQQSKRPMRENNLRQVLAIEGGQVLQNPTGLAVGSFVTEGTTSYLLLPGPPNELIPMF
QQAARPLLINAFPQEEQLISRVLRFYGIGESQLVTEIQSLIAHQTNPTIAPYAKPNEVTLRLTVKTKDLVAGEELLTATE
EKVLAKVGDYFYGYGDDNSLAKVTVDLLLQNGQTVTAAESLTAGLFQSTLGEIAGASKIFKGGFVTYSQETKENFLGISH
ELLEEHGTVSEACAKEMAEKARQLAKSNYGLSFTGVAGDPIEGQPTGTVWIGLAEEGQPTVAECFHFDRDRNYIRQSAVM
RGLDLLRRRIINKK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=69946 EL279_RS13620 WP_089201952.1 2686916..2688160(-) (cinA) [Enterococcus faecalis strain KUB3007]
ATGAAAGCAGAAATCATTGCAGTCGGAACAGAGTTATTACTTGGACAAGTAGTGAATACCAACGCCACCTTTTTATCAGA
AGAGTTAGCTGCGCTAGGCATCGATGTTTACTATCAGACCGTTGTTGGTGATAACGGCGGCCGCTTAGAAACGCTACTAA
CAGAAGCAGAACAAAGAAGTGATTTAATTGTCCTTTGTGGAGGGCTAGGACCTACAGAAGACGATTTAACCAAGCAAGTT
GTCGCACAACATCTCCATAAATCATTAGTAGAAGATCAAGAAGGATTGAACCGCTTACACCAGTTTTTCCAACAGTCTAA
GCGGCCAATGAGGGAAAATAATCTACGACAAGTGTTAGCCATTGAAGGTGGACAAGTTCTTCAAAACCCGACAGGATTAG
CGGTTGGTTCTTTCGTAACAGAAGGCACAACAAGCTATTTGCTCTTACCAGGGCCGCCCAATGAATTAATTCCGATGTTC
CAACAAGCGGCACGACCTTTATTGATTAATGCGTTTCCACAAGAAGAACAATTGATTTCAAGAGTCTTGCGTTTTTATGG
CATTGGTGAATCACAGCTGGTGACCGAGATTCAATCGTTGATTGCGCACCAAACGAATCCAACCATTGCGCCTTATGCTA
AGCCTAATGAAGTGACACTTCGTTTAACAGTTAAAACAAAAGACTTAGTAGCTGGCGAAGAATTATTAACAGCGACGGAA
GAAAAGGTTTTAGCTAAAGTGGGAGACTATTTTTATGGGTATGGGGATGACAATAGTTTAGCCAAGGTAACAGTGGATTT
GTTATTACAAAACGGACAAACCGTCACGGCTGCTGAGAGCCTCACCGCTGGCCTATTCCAAAGTACACTGGGGGAAATTG
CGGGTGCTTCGAAGATTTTTAAGGGAGGCTTCGTGACGTATTCGCAAGAAACAAAAGAGAACTTTTTAGGAATTTCTCAT
GAACTTTTAGAAGAACATGGCACGGTAAGTGAAGCGTGTGCCAAAGAAATGGCAGAGAAAGCGCGTCAGTTAGCTAAATC
TAACTATGGTTTATCATTTACTGGGGTCGCTGGTGACCCAATCGAAGGTCAACCGACAGGCACTGTTTGGATTGGGCTGG
CGGAAGAAGGCCAACCAACCGTTGCAGAATGTTTCCATTTTGACCGTGACCGAAATTATATTAGACAGAGTGCGGTTATG
CGAGGGTTAGATCTTTTGCGGCGCCGAATCATTAATAAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

52.392

100

0.529
  cinA Streptococcus mitis SK321

51.306

100

0.522
  cinA Streptococcus mitis NCTC 12261

51.069

100

0.519
  cinA Streptococcus pneumoniae TIGR4

50.355

100

0.514
  cinA Streptococcus pneumoniae D39

50.119

100

0.51
  cinA Streptococcus pneumoniae Rx1

49.881

100

0.507
  cinA Streptococcus pneumoniae R6

49.881

100

0.507
  cinA Bacillus subtilis subsp. subtilis str. 168

48.522

98.068

0.476
  cinA Streptococcus suis isolate S10

43.75

100

0.44

Multiple sequence alignment