Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   EP162_RS06335 Genome accession   NZ_AP018524
Coordinates   1469180..1469413 (-) Length   77 a.a.
NCBI ID   WP_013774257.1    Uniprot ID   F3YBE3
Organism   Melissococcus plutonius strain DAT585     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1464180..1474413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EP162_RS06305 (DAT585_1279) - 1465153..1466346 (-) 1194 WP_127468702.1 acetate kinase -
  EP162_RS06310 (DAT585_1280) - 1466375..1467382 (-) 1008 WP_013774253.1 class I SAM-dependent methyltransferase -
  EP162_RS06315 (DAT585_1281) comGG 1467662..1468000 (-) 339 WP_268765908.1 competence type IV pilus minor pilin ComGG -
  EP162_RS06320 (DAT585_1282) comGF 1467997..1468437 (-) 441 WP_053078316.1 competence type IV pilus minor pilin ComGF -
  EP162_RS06325 (DAT585_1283) - 1468418..1468762 (-) 345 WP_041363232.1 hypothetical protein -
  EP162_RS06330 (DAT585_1284) comGD 1468779..1469183 (-) 405 WP_013774256.1 competence type IV pilus minor pilin ComGD -
  EP162_RS06335 (DAT585_1285) comYC 1469180..1469413 (-) 234 WP_013774257.1 competence type IV pilus major pilin ComGC Machinery gene
  EP162_RS06340 - 1469792..1470076 (-) 285 WP_041363488.1 hypothetical protein -
  EP162_RS06345 (DAT585_1287) - 1470066..1470665 (-) 600 WP_013774259.1 Panacea domain-containing protein -
  EP162_RS06350 (DAT585_1288) - 1471287..1472051 (-) 765 WP_268766437.1 peptidoglycan amidohydrolase family protein -
  EP162_RS06355 (DAT585_1289) - 1472057..1472251 (-) 195 WP_013774261.1 phage holin -
  EP162_RS06360 (DAT585_1290) - 1472253..1472495 (-) 243 WP_013774262.1 hemolysin XhlA family protein -
  EP162_RS06365 (DAT585_1291) - 1472533..1472679 (-) 147 WP_013774263.1 XkdX family protein -
  EP162_RS06370 (DAT585_1292) - 1472669..1473043 (-) 375 WP_013774264.1 hypothetical protein -
  EP162_RS06375 (DAT585_1293) - 1473063..1473524 (-) 462 WP_048590192.1 hypothetical protein -
  EP162_RS06380 (DAT585_1294) - 1473524..1474216 (-) 693 WP_013774265.1 phage baseplate upper protein -

Sequence

Protein


Download         Length: 77 a.a.        Molecular weight: 8909.56 Da        Isoelectric Point: 6.3134

>NTDB_id=69855 EP162_RS06335 WP_013774257.1 1469180..1469413(-) (comYC) [Melissococcus plutonius strain DAT585]
MLIVLLILSVLILLFVPNLAKQKETIDQKGNEAIVKVIEAQMELYELDKNVKPSAEQLLTEKYITKDQYEKYQTAKK

Nucleotide


Download         Length: 234 bp        

>NTDB_id=69855 EP162_RS06335 WP_013774257.1 1469180..1469413(-) (comYC) [Melissococcus plutonius strain DAT585]
ATGCTCATTGTTTTGCTTATTCTTTCTGTTTTAATTTTGTTATTTGTTCCAAATCTAGCAAAACAAAAAGAAACAATTGA
TCAAAAAGGAAATGAAGCAATTGTTAAAGTTATTGAAGCACAAATGGAATTATATGAATTAGACAAAAATGTAAAACCTT
CTGCTGAACAATTATTAACGGAAAAATACATTACTAAAGATCAATATGAAAAATATCAAACAGCTAAAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus suis isolate S10

53.247

100

0.532
  comGC/cglC Streptococcus pneumoniae Rx1

54.795

94.805

0.519
  comGC/cglC Streptococcus pneumoniae D39

54.795

94.805

0.519
  comGC/cglC Streptococcus pneumoniae R6

54.795

94.805

0.519
  comGC/cglC Streptococcus pneumoniae TIGR4

54.795

94.805

0.519
  comYC Streptococcus gordonii str. Challis substr. CH1

53.333

97.403

0.519
  comGC Bacillus subtilis subsp. subtilis str. 168

44.118

88.312

0.39
  comGC/cglC Streptococcus mitis NCTC 12261

50.847

76.623

0.39
  comGC/cglC Streptococcus mitis SK321

50.847

76.623

0.39
  comGC Lactococcus lactis subsp. cremoris KW2

47.458

76.623

0.364

Multiple sequence alignment